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new ec model

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chhylp123
2024-06-30 19:53:51 -04:00
parent 70fd9a0b1f
commit d5f8a8a6c0
12 changed files with 2746 additions and 52 deletions
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Levenshtein_distance.h
+20 -2
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@@ -548,6 +548,24 @@ inline int32_t pop_trace_back(asg16_v *res, int32_t i, uint16_t *c, uint32_t *le
return i;
}
inline void push_trace_bp(asg16_v *res, uint16_t c, uint16_t b, uint32_t len, uint32_t is_append)
{
uint16_t p;
if((is_append) && (res->n)) {
}
c <<= 14;
while (len >= (0x3fff)) {
p = (c + (0x3fff)); kv_push(uint16_t, *res, p); len -= (0x3fff);
}
if(len) {
p = (c + len); kv_push(uint16_t, *res, p);
}
}
///511 -> 16 64-bits
// #define MAX_E 511
// #define MAX_L 2500
@@ -601,7 +619,7 @@ inline uint32_t cigar_check(char *pstr, char *tstr, bit_extz_t *ez)
if(c == 0) {
for (k=0;(k<cl)&&(pstr[pi]==tstr[ti]);k++,pi++,ti++);
if(k!=cl) {
fprintf(stderr, "ERROR-d-0\n");
fprintf(stderr, "ERROR-d-0, pi::%d, ti::%d\n", pi, ti);
return 0;
}
} else {
@@ -609,7 +627,7 @@ inline uint32_t cigar_check(char *pstr, char *tstr, bit_extz_t *ez)
if(c == 1) {
for (k=0;(k<cl)&&(pstr[pi]!=tstr[ti]);k++,pi++,ti++);
if(k!=cl) {
fprintf(stderr, "ERROR-d-1\n");
fprintf(stderr, "ERROR-d-1, pi::%d, ti::%d\n", pi, ti);
return 0;
}
} else if(c == 2) {///more p