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resolve conflict

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This commit is contained in:
chhylp123
2020-11-16 01:44:12 -05:00
parent ab073aa1fc
commit d87314a07e
3 changed files with 129 additions and 5 deletions
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13
CommandLines.cpp
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@@ -27,6 +27,7 @@ static ko_longopt_t long_options[] = {
{ "lowQ", ko_required_argument, 312 },
{ "h1", ko_required_argument, 313 },
{ "h2", ko_required_argument, 314 },
{ "enzyme", ko_required_argument, 315 },
{ 0, 0, 0 }
};
@@ -101,6 +102,7 @@ void init_opt(hifiasm_opt_t* asm_opt)
asm_opt->required_read_name = NULL;
asm_opt->hic_files[0] = NULL;
asm_opt->hic_files[1] = NULL;
asm_opt->hic_enzymes = NULL;
asm_opt->thread_num = 1;
asm_opt->k_mer_length = 51;
asm_opt->hic_mer_length = 31;
@@ -139,14 +141,13 @@ void init_opt(hifiasm_opt_t* asm_opt)
asm_opt->recover_atg_cov_max = INT_MAX;
asm_opt->hom_global_coverage = -1;
asm_opt->bed_inconsist_rate = 70;
asm_opt->bub_mer_length = 3;
}
void destory_opt(hifiasm_opt_t* asm_opt)
{
if(asm_opt->read_file_names != NULL)
{
free(asm_opt->read_file_names);
}
if(asm_opt->read_file_names != NULL) free(asm_opt->read_file_names);
if(asm_opt->hic_enzymes != NULL) free(asm_opt->hic_enzymes);
}
void ha_opt_reset_to_round(hifiasm_opt_t* asm_opt, int round)
@@ -401,6 +402,10 @@ void get_queries(int argc, char *argv[], ketopt_t* opt, hifiasm_opt_t* asm_opt)
}
}
void get_hic_enzymes(char *argv, hifiasm_opt_t* asm_opt)
{
///strtok
}
int CommandLine_process(int argc, char *argv[], hifiasm_opt_t* asm_opt)
{