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update contig flipping

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chhylp123
2021-03-25 03:03:19 -04:00
parent 9e3e1e8bab
commit d89a630ff3
6 changed files with 1041 additions and 56 deletions
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Purge_Dups.h
+1 -1
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@@ -16,7 +16,7 @@
void purge_dups(ma_ug_t *ug, asg_t *read_g, ma_sub_t* coverage_cut, ma_hit_t_alloc* sources,
ma_hit_t_alloc* reverse_sources, R_to_U* ruIndex, kvec_asg_arc_t_warp* edge, float density,
uint32_t purege_minLen, int max_hang, int min_ovlp, float drop_ratio, uint32_t just_contain,
uint32_t just_coverage, hap_cov_t *cov);
uint32_t just_coverage, hap_cov_t *cov, uint32_t collect_p_trans);
void fill_unitig(uint64_t* buffer, uint32_t bufferLen, asg_t* read_g, kvec_asg_arc_t_warp* edge,
uint32_t is_circle, uint64_t* rLen);
void get_contig_length(ma_ug_t *ug, asg_t *g, uint64_t* primaryLen, uint64_t* alterLen);