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r330: unimap heuristic for mz sampling

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Heng Li
2021-01-21 11:05:37 -05:00
parent 02f0b5dd22
commit da672118e5
6 changed files with 14 additions and 12 deletions
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CommandLines.h
+2 -1
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@@ -3,7 +3,7 @@
#include <pthread.h>
#define HA_VERSION "0.13-r329-dirty"
#define HA_VERSION "0.13-r330-dirty"
#define VERBOSE 0
@@ -34,6 +34,7 @@ typedef struct {
int thread_num;
int k_mer_length;
int mz_win;
int sample_dist;
int bf_shift;
int max_kmer_cnt;
double high_factor; // coverage cutoff set to high_factor*hom_cov