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has bug multiple threads

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chhylp123
2021-12-28 21:48:41 -05:00
parent 8a0ec3d575
commit dbc72b8c2d
5 changed files with 447 additions and 160 deletions
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32
Overlaps.cpp
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@@ -31102,9 +31102,14 @@ char *get_outfile_name(char* output_file_name)
return buf;
}
void create_ul_info()
void create_ul_info(ma_hit_t_alloc* sources, int max_hang, int min_ovlp, long long gap_fuzz)
{
ug_opt_t opt; memset(&opt, 0, sizeof(opt));
opt.sources = sources;
opt.max_hang = max_hang;
opt.min_ovlp = min_ovlp;
opt.gap_fuzz = gap_fuzz;
ul_load(&opt);
exit(1);
}
@@ -31117,30 +31122,6 @@ float min_ovlp_drop_ratio, float max_ovlp_drop_ratio, char* output_file_name,
long long bubble_dist, int read_graph, R_to_U* ruIndex, asg_t **sg_ptr,
ma_sub_t **coverage_cut_ptr, int debug_g)
{
if(asm_opt.ar) create_ul_info();
char *o_file = get_outfile_name(output_file_name);
ma_sub_t *coverage_cut = *coverage_cut_ptr;
asg_t *sg = *sg_ptr;
@@ -31166,6 +31147,7 @@ ma_sub_t **coverage_cut_ptr, int debug_g)
{
memset(R_INF.trio_flag, AMBIGU, R_INF.total_reads*sizeof(uint8_t));
}
if(asm_opt.ar) create_ul_info(sources, max_hang_length, mini_overlap_length, gap_fuzz);
///print_binned_reads(sources, n_read, coverage_cut);
clean_weak_ma_hit_t(sources, reverse_sources, n_read);