From dc67fc6d2b1216556bf5e51ee5261c6a66049f74 Mon Sep 17 00:00:00 2001
From: Haoyu Cheng <hcheng@jimmy.harvard.edu>
Date: Thu, 26 Dec 2019 14:31:00 -0500
Subject: [PATCH] test readme

---
 README.md | 10 ++++++++--
 1 file changed, 8 insertions(+), 2 deletions(-)

diff --git a/README.md b/README.md
index b27d494..e0f745e 100644
--- a/README.md
+++ b/README.md
@@ -1,3 +1,9 @@
-# Long_read_assembly
+## Getting Started
 
-##test
\ No newline at end of file
+```sh
+# Install hifiasm and miniasm (requiring g++ and zlib)
+git clone https://github.com/chhylp123/hifiasm.git
+cd hifiasm && make
+# Assembly (corrected reads are at NA12878.asm.fa, assembly graph is at NA12878.asm.fa.gfa)
+./hifiasm -w -l -q NA12878.fq.gz -o NA12878.asm.fa -k 40 -t 32 -r 2 -a 4 -z 0
+```
\ No newline at end of file