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chhylp123
2022-10-19 13:23:25 -04:00
parent 3d65bef9de
commit df3e0eeaa3
7 changed files with 3371 additions and 116 deletions
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Overlaps.cpp
+5 -3
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@@ -14820,7 +14820,8 @@ const char* command)
uint32_t print_debug_gfa(asg_t *read_g, ma_ug_t *ug, ma_sub_t* coverage_cut, const char* output_file_name,
ma_hit_t_alloc* sources, R_to_U* ruIndex, int max_hang, int min_ovlp, int is_update_ou, int is_check_alter_lable, int is_seq)
{
kvec_asg_arc_t_warp new_rtg_edges;
kvec_asg_arc_t_warp new_rtg_edges;
uint32_t free_ug = ((ug == NULL)?1:0);
kv_init(new_rtg_edges.a);
if(ug == NULL) {
@@ -14865,9 +14866,10 @@ ma_hit_t_alloc* sources, R_to_U* ruIndex, int max_hang, int min_ovlp, int is_upd
fclose(output_file);
free(gfa_name);
ma_ug_destroy(ug);
if(free_ug) ma_ug_destroy(ug);
kv_destroy(new_rtg_edges.a);
exit(0);
// exit(0);
return 1;
}