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Merge branch 'master' of https://github.com/chhylp123/Long_read_assembly

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chhylp123
2020-08-05 17:46:17 -04:00
parent a8aa37d201 ebedae2a21
commit e031c70d0f
1 changed files with 8 additions and 3 deletions
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Makefile
+8 -3
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@@ -1,5 +1,7 @@
CXX= g++ CXX= g++
CC= gcc
CXXFLAGS= -g -O3 -msse4.2 -mpopcnt -fomit-frame-pointer -Wall CXXFLAGS= -g -O3 -msse4.2 -mpopcnt -fomit-frame-pointer -Wall
CFLAGS= $(CXXFLAGS)
CPPFLAGS= CPPFLAGS=
INCLUDES= INCLUDES=
OBJS= CommandLines.o Process_Read.o Assembly.o Hash_Table.o \ OBJS= CommandLines.o Process_Read.o Assembly.o Hash_Table.o \
@@ -13,12 +15,15 @@ ifneq ($(asan),)
LIBS+=-fsanitize=address LIBS+=-fsanitize=address
endif endif
.SUFFIXES:.cpp .o .SUFFIXES:.cpp .c .o
.PHONY:all clean depend .PHONY:all clean depend
.cpp.o: .cpp.o:
$(CXX) -c $(CXXFLAGS) $(CPPFLAGS) $(INCLUDES) $< -o $@ $(CXX) -c $(CXXFLAGS) $(CPPFLAGS) $(INCLUDES) $< -o $@
.c.o:
$(CC) -c $(CFLAGS) $(CPPFLAGS) $(INCLUDES) $< -o $@
all:$(EXE) all:$(EXE)
$(EXE):$(OBJS) main.o $(EXE):$(OBJS) main.o
@@ -36,8 +41,9 @@ Assembly.o: Assembly.h CommandLines.h Process_Read.h Overlaps.h kvec.h kdq.h
Assembly.o: Hash_Table.h htab.h POA.h Correct.h Levenshtein_distance.h Assembly.o: Hash_Table.h htab.h POA.h Correct.h Levenshtein_distance.h
Assembly.o: kthread.h Assembly.o: kthread.h
CommandLines.o: CommandLines.h ketopt.h CommandLines.o: CommandLines.h ketopt.h
Correct.o: Correct.h Hash_Table.h htab.h Process_Read.h Overlaps.h kvec.h ksw2.h Correct.o: Correct.h Hash_Table.h htab.h Process_Read.h Overlaps.h kvec.h
Correct.o: kdq.h CommandLines.h Levenshtein_distance.h POA.h Assembly.h Correct.o: kdq.h CommandLines.h Levenshtein_distance.h POA.h Assembly.h
Correct.o: ksw2.h
Hash_Table.o: Hash_Table.h htab.h Process_Read.h Overlaps.h kvec.h kdq.h Hash_Table.o: Hash_Table.h htab.h Process_Read.h Overlaps.h kvec.h kdq.h
Hash_Table.o: CommandLines.h ksort.h Hash_Table.o: CommandLines.h ksort.h
Levenshtein_distance.o: Levenshtein_distance.h Levenshtein_distance.o: Levenshtein_distance.h
@@ -65,4 +71,3 @@ main.o: CommandLines.h Process_Read.h Overlaps.h kvec.h kdq.h Assembly.h
main.o: Levenshtein_distance.h htab.h main.o: Levenshtein_distance.h htab.h
sketch.o: kvec.h htab.h Process_Read.h Overlaps.h kdq.h CommandLines.h sketch.o: kvec.h htab.h Process_Read.h Overlaps.h kdq.h CommandLines.h
sys.o: htab.h Process_Read.h Overlaps.h kvec.h kdq.h CommandLines.h sys.o: htab.h Process_Read.h Overlaps.h kvec.h kdq.h CommandLines.h
ksw2_extz2_sse.o: ksw2.h