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0.16.0 release

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chhylp123
2021-08-22 21:58:00 -04:00
parent 37b07e4d33
commit e230b3a55f
10 changed files with 126 additions and 85 deletions
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Purge_Dups.cpp
+16 -4
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@@ -122,8 +122,8 @@ void print_peak(long long* cov_buf, long long cov_buf_length, long long max_i)
}
void get_read_peak(long long* cov_buf, long long cov_buf_length, long long* topo_peak_cov,
long long* hom_peak, long long* het_peak, long long* k_mer_only, long long* coverage_only)
void get_read_peak(asg_t *read_g, long long* cov_buf, long long cov_buf_length, long long* topo_peak_cov,
long long* hom_peak, long long* het_peak, long long* k_mer_only, long long* coverage_only, long long g_size)
{
long long i, start, err_i, max_i, max2_i, max3_i, topo_peak_i, max, max2, max3, topo_peak, min;
@@ -242,6 +242,18 @@ long long* hom_peak, long long* het_peak, long long* k_mer_only, long long* cove
coverage_hom = max_i;
}
if(g_size > 0) {
long long n_bs, m_peak_hom = -1;
int p_ht = -1;
for (i = n_bs = 0; i < read_g->n_seq; i++) n_bs += read_g->seq[i].len;
m_peak_hom = n_bs/g_size;
if(m_peak_hom > 0) {
p_ht = -1;
coverage_hom = adj_m_peak_hom(m_peak_hom, max_i, max2_i, max3_i, &p_ht);
coverage_het = p_ht;
}
}
if(k_mer_het != -1)
{
(*het_peak) = k_mer_het;
@@ -410,8 +422,8 @@ long long* k_mer_only, long long* coverage_only)
cov_buf_length);
}
get_read_peak(cov_buf, cov_buf_length, alter_peak == -1? NULL: &alter_peak, &hom_peak, &het_peak,
k_mer_only, coverage_only);
get_read_peak(read_g, cov_buf, cov_buf_length, alter_peak == -1? NULL: &alter_peak, &hom_peak, &het_peak,
k_mer_only, coverage_only, asm_opt.hg_size);
free(cov_buf);