0.16.0 release

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chhylp123
2021-08-22 21:58:00 -04:00
parent 37b07e4d33
commit e230b3a55f
10 changed files with 126 additions and 85 deletions
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.TH hifiasm 1 "25 July 2021" "hifiasm-0.15.5 (r350)" "Bioinformatics tools"
.TH hifiasm 1 "22 August 2021" "hifiasm-0.16.0 (r369)" "Bioinformatics tools"
.SH NAME
.PP
@@ -161,6 +161,19 @@ Some old Hifi reads may consist of
short adapters (e.g., 20bp adapter at one end). For such data, trimming short adapters would
significantly improve the assembly quality.
.TP
.BI --max-kocc \ INT
Employ k-mers occurring <
.IR INT
times to rescue repetitive overlaps [2000].
This option may improve the resolution of repeats.
.TP
.BI --hg-size \ INT (k/m/g)
Estimated haploid genome size used for inferring read coverage [auto].
This option is used to get accurate homozygous read coverage during
error correction. Common suffices are required, for example, 100m or 3g.
.TP
.BI --min-hist-cnt \ INT
When analyzing the k-mer spectrum, ignore counts below