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Change stupid merge function

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This commit is contained in:
Haoyu Cheng
2019-05-19 05:02:28 -04:00
parent 63509bcb7f
commit e3924b5c08
5 changed files with 696 additions and 1 deletions
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Hash_Table.h
+24
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@@ -62,6 +62,24 @@ typedef struct
uint8_t strand;
} k_mer_hit;
typedef struct
{
k_mer_hit node;
uint64_t ID;
} ElemType;
typedef struct
{
ElemType* heap;
uint64_t* index_i;
int len;
int MaxSize;
} HeapSq;
typedef struct
{
k_mer_hit* list;
@@ -347,6 +365,12 @@ void clear_k_mer_pos_list_alloc(k_mer_pos_list_alloc* list);
void append_k_mer_pos_list_alloc(k_mer_pos_list_alloc* list, k_mer_pos* n_list, uint64_t n_length,
uint64_t n_end_pos, uint8_t n_direction);
void merge_k_mer_pos_list_alloc(k_mer_pos_list_alloc* list, Candidates_list* candidates);
void merge_k_mer_pos_list_alloc_heap_sort(k_mer_pos_list_alloc* list, Candidates_list* candidates, HeapSq* HBT);
void merge_k_mer_pos_list_alloc_heap_sort_advance(k_mer_pos_list_alloc* list, Candidates_list* candidates, HeapSq* HBT);
void Init_Heap(HeapSq* HBT);
void destory_Heap(HeapSq* HBT);
void clear_Heap(HeapSq* HBT);