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chhylp123
2021-06-16 16:44:08 -04:00
parent 5b0a0c85ef
commit e3b721c29a
3 changed files with 459 additions and 42 deletions
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horder.h
+19
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@@ -3,6 +3,24 @@
#include <stdint.h>
#include "hic.h"
#define get_hit_srev(x, k) ((x).a.a[(k)].s>>63)
#define get_hit_slen(x, k) ((x).a.a[(k)].len>>32)
#define get_hit_suid(x, k) (((x).a.a[(k)].s<<1)>>(64 - (x).uID_bits))
#define get_hit_spos(x, k) ((x).a.a[(k)].s & (x).pos_mode)
#define get_hit_spos_e(x, k) (get_hit_srev((x),(k))?\
((get_hit_spos((x),(k))+1>=get_hit_slen((x),(k)))?\
(get_hit_spos((x),(k))+1-get_hit_slen((x),(k))):0)\
:(get_hit_spos((x),(k))+get_hit_slen((x),(k))-1))
#define get_hit_erev(x, k) ((x).a.a[(k)].e>>63)
#define get_hit_elen(x, k) ((uint32_t)((x).a.a[(k)].len))
#define get_hit_euid(x, k) (((x).a.a[(k)].e<<1)>>(64 - (x).uID_bits))
#define get_hit_epos(x, k) ((x).a.a[(k)].e & (x).pos_mode)
#define get_hit_epos_e(x, k) (get_hit_erev((x),(k))?\
((get_hit_epos((x),(k))+1>=get_hit_elen((x),(k)))?\
(get_hit_epos((x),(k))+1-get_hit_elen((x),(k))):0)\
:(get_hit_epos((x),(k))+get_hit_elen((x),(k))-1))
typedef struct {
uint32_t v;
uint32_t u;
@@ -40,4 +58,5 @@ horder_t *init_horder_t(kvec_pe_hit *i_hits, uint64_t i_hits_uid_bits, uint64_t
asg_t *i_rg, ma_ug_t* i_ug, bubble_type* bub, kv_u_trans_t *ref, ug_opt_t *opt, uint32_t round);
void destory_horder_t(horder_t **h);
void horder_clean_sg_by_utg(asg_t *sg, ma_ug_t *ug);
kvec_pe_hit *get_r_hits_for_trio(kvec_pe_hit *u_hits, asg_t* r_g, ma_ug_t* ug, bubble_type* bub, uint64_t uID_bits, uint64_t pos_mode);
#endif