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chhylp123
2022-11-01 21:44:13 -04:00
parent f4b6223fde
commit e66c003b65
6 changed files with 666 additions and 183 deletions
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gfa_ut.h
+9
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@@ -2,6 +2,15 @@
#define __GFA_UT__
#include "Overlaps.h"
typedef struct {
asg_t *g;
ma_hit_t_alloc *src;
R_to_U* ruIndex;
int64_t max_hang;
int64_t min_ovlp;
int64_t ul_occ;
} sset_aux;
void ul_clean_gfa(ug_opt_t *uopt, asg_t *sg, ma_hit_t_alloc *src, ma_hit_t_alloc *rev, R_to_U* rI, int64_t clean_round, double min_ovlp_drop_ratio, double max_ovlp_drop_ratio,
double ou_drop_rate, int64_t max_tip, int64_t gap_fuzz, bub_label_t *b_mask_t, int32_t is_ou, int32_t is_trio, uint32_t ou_thres, char *o_file);
uint32_t asg_arc_cut_tips(asg_t *g, uint32_t max_ext, asg64_v *in, uint32_t is_ou, R_to_U *ru);