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fixed a few harmless warnings

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Heng Li
2019-12-26 10:06:58 -05:00
parent 7fb4646beb
commit e6cdac9ea9
1 changed files with 5 additions and 2 deletions
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Overlaps.cpp
+5 -2
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@@ -104,6 +104,7 @@ uint64_t* source_index, long long listLen)
source_i = (uint32_t)(source_index[i]); source_i = (uint32_t)(source_index[i]);
tmp = &(source_paf_list[source_n].buffer[source_i]); tmp = &(source_paf_list[source_n].buffer[source_i]);
ele.del = 0;
ele.rev = tmp->rev; ele.rev = tmp->rev;
ele.qns = Get_tn((*tmp)); ele.qns = Get_tn((*tmp));
ele.qns = ele.qns << 32; ele.qns = ele.qns << 32;
@@ -445,6 +446,7 @@ void normalize_ma_hit_t(ma_hit_t_alloc* sources, long long num_sources)
else else
{ {
///must have this line ///must have this line
new_element.del = 0;
new_element.ml = 1; new_element.ml = 1;
new_element.no_l_indel = 1; new_element.no_l_indel = 1;
set_reverse_overlap(&new_element, &(sources[i].buffer[j])); set_reverse_overlap(&new_element, &(sources[i].buffer[j]));
@@ -4685,7 +4687,7 @@ int asg_arc_del_too_short_overlaps(asg_t *g, long long dropLen, float drop_ratio
double startTime = Get_T(); double startTime = Get_T();
uint32_t v, v_max, v_maxLen, n_vtx = g->n_seq * 2, n_short = 0; uint32_t v, v_max, v_maxLen, n_vtx = g->n_seq * 2, n_short = 0;
long long drop_ratio_Len; long long drop_ratio_Len = 0;
for (v = 0; v < n_vtx; ++v) for (v = 0; v < n_vtx; ++v)
{ {
@@ -5741,7 +5743,7 @@ int asg_arc_del_tri_link(asg_t *g, int max_dist)
if(f1 && f2) if(f1 && f2)
{ {
if((l1 <= min_thres) || (l2 <= min_thres)) if(l1 <= min_thres || l2 <= min_thres) // TODO: check this block: it is always false
{ {
continue; continue;
} }
@@ -7607,6 +7609,7 @@ int asg_arc_del_orthology_multiple_way(asg_t *g, ma_hit_t_alloc* reverse_sources
n_arc = get_real_length(g, v, NULL); n_arc = get_real_length(g, v, NULL);
if (n_arc < 2) continue; if (n_arc < 2) continue;
v_max = (uint32_t)-1; v_max = (uint32_t)-1;
v_maxLen = 0;
for (i = 0, n_arc = 0; i < nv; i++) for (i = 0, n_arc = 0; i < nv; i++)
{ {