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remove unnecessary bin files of Hi-C

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chhylp123
2021-03-18 13:44:30 -04:00
parent 2db42c8c00
commit e6e6dbf7b3
2 changed files with 6 additions and 8 deletions
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Overlaps.cpp
+5 -7
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@@ -11964,7 +11964,7 @@ bub_label_t* b_mask_t)
hc_links link;
if(load_hc_links(&link, output_file_name) == 0)
///if(load_hc_links(&link, output_file_name) == 0)
{
init_hc_links(&link, ug->g->n_seq, R_INF.total_reads);
asg_t *copy_sg = copy_read_graph(sg);
@@ -11980,7 +11980,7 @@ bub_label_t* b_mask_t)
ma_ug_print_bed(ug, sg, &R_INF, coverage_cut, sources, &new_rtg_edges,
max_hang, min_ovlp, asm_opt.hic_inconsist_rate, NULL, NULL, &link);
write_hc_links(&link, output_file_name);
///write_hc_links(&link, output_file_name);
}
@@ -28169,6 +28169,8 @@ ma_sub_t **coverage_cut_ptr, int debug_g)
// rescue_no_coverage_aggressive(sg, sources, reverse_sources, &coverage_cut, ruIndex, max_hang_length,
// mini_overlap_length, bubble_dist, 10);
rescue_bubble_by_chain(sg, coverage_cut, sources, reverse_sources, (asm_opt.max_short_tip*2), 0.15, 3,
ruIndex, 0.05, 0.9, max_hang_length, mini_overlap_length, 10, gap_fuzz, &b_mask_t);
if (asm_opt.flag & HA_F_VERBOSE_GFA)
{
@@ -28177,11 +28179,7 @@ ma_sub_t **coverage_cut_ptr, int debug_g)
debug_gfa:;
/*******************************for debug***************************************/
}
rescue_bubble_by_chain(sg, coverage_cut, sources, reverse_sources, (asm_opt.max_short_tip*2), 0.15, 3,
ruIndex, 0.05, 0.9, max_hang_length, mini_overlap_length, 10, gap_fuzz, &b_mask_t);
if (ha_opt_triobin(&asm_opt) && ha_opt_hic(&asm_opt))
{
char *buf = (char*)calloc(strlen(output_file_name) + 25, 1);