debug mbg

rcut.h

@@ -15,6 +15,7 @@ typedef struct {
 }mc_interval_t;
 
 #define mc_node_t int8_t
+#define mcg_node_t uint32_t
 // #define w_t int64_t
 // #define t_w_t int64_t
 // #define w_cast(x) ((t_w_t)((x) < 0 ? (x) - 0.5 : (x) + 0.5))
@@ -72,6 +73,35 @@ typedef struct {
     mb_match_t* e;
 }mb_g_t;
 
+typedef struct {
+	mcg_node_t s;
+	uint16_t h[2], hc;
+	double hw[2];
+}mc_gg_status;
+
+typedef struct {
+	mc_gg_status *a;
+	size_t n, m;
+}kv_gg_status;
+
+typedef struct {
+	mcg_node_t *a;
+	size_t n, m;
+}mcb_t;
+
+
+typedef struct {
+	kv_gg_status *s;
+    // ma_ug_t *ug;
+    // asg_t *rg;
+    uint32_t un;
+    mc_match_t* e;
+	kvec_t(mcb_t) m;
+	mcg_node_t mask;
+	uint16_t hN;
+}mc_gg_t;
+
+
 static inline uint64_t kr_splitmix64(uint64_t x)
 {
 	uint64_t z = (x += 0x9E3779B97F4A7C15ULL);
@@ -90,4 +120,9 @@ static inline double kr_drand_r(uint64_t *x)
 
 void mc_solve(hap_overlaps_list* ovlp, trans_chain* t_ch, kv_u_trans_t *ta, ma_ug_t *ug, asg_t *read_g, double f_rate, uint8_t* trio_flag, uint32_t renew_s, int8_t *s, uint32_t is_sys, bubble_type* bub, kv_u_trans_t *ref);
 void debug_mc_g_t(const char* name);
+void mc_solve_general(kv_u_trans_t *ta, uint32_t un, kv_gg_status *s, uint16_t hapN, uint16_t update_ta, uint16_t write_dump);
+kv_gg_status *init_mc_gg_status(ma_ug_t *ug, asg_t *read_g, ma_sub_t* coverage_cut, 
+ma_hit_t_alloc* sources, R_to_U* ruIndex, uint64_t t_cov, uint16_t hapN);
+void destory_mc_gg_t(mc_gg_t **p);
+void debug_mc_gg_t(const char* fn, uint32_t update_ta, uint32_t convert_mc_g_t);
 #endif