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chhylp123
2021-05-30 09:02:25 -04:00
parent a39f01f4d8
commit e774a83be2
18 changed files with 2497 additions and 207 deletions
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sketch.cpp
-21
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@@ -5,26 +5,6 @@
#include "kvec.h"
#include "htab.h"
typedef struct { // a simplified version of kdq
int front, count;
int a[64];
} tiny_queue_t;
static inline void tq_push(tiny_queue_t *q, int x)
{
q->a[((q->count++) + q->front) & 0x3f] = x;
}
static inline int tq_shift(tiny_queue_t *q)
{
int x;
if (q->count == 0) return -1;
x = q->a[q->front++];
q->front &= 0x3f;
--q->count;
return x;
}
/**
* Find symmetric (w,k)-minimizers on a DNA sequence
*
@@ -160,7 +140,6 @@ kvec_t_u8_warp* k_flag, kvec_t_u64_warp* dbg_ct)
memset(k_flag->a.a, 0, k_flag->a.n);
}
assert(len > 0 && len < 1<<27 && rid < 1<<28 && (w > 0 && w < 256) && (k > 0 && k <= 63));
///sizeof(ha_mz1_t) = 16
memset(buf, 0xff, w * 16);