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fixed duplicated chaining issue

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chhylp123
2022-05-03 17:35:43 -04:00
parent 8138941a26
commit e8399b18f1
7 changed files with 270 additions and 112 deletions
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Overlaps.h
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@@ -1086,6 +1086,7 @@ void output_unitig_graph(asg_t *sg, ma_sub_t* coverage_cut, char* output_file_na
ma_hit_t_alloc* sources, R_to_U* ruIndex, int max_hang, int min_ovlp);
void flat_soma_v(asg_t *sg, ma_hit_t_alloc* sources, R_to_U* ruIndex);
void hic_clean(asg_t* read_g);
int64_t count_edges_v_w(asg_t *g, uint32_t v, uint32_t w);
#define JUNK_COV 5
#define DISCARD_RATE 0.8