xxay/hifiasm
1
0
Fork 0
mirror of https://github.com/chhylp123/hifiasm.git synced 2026-10-09 06:58:12 +08:00
Code Issues Packages Projects Releases Wiki Activity

0.20.0-r631

Browse Source
This commit is contained in:
chhylp123
2024-10-09 17:09:10 -04:00
parent d5f8a8a6c0
commit e8b18560a5
14 changed files with 7710 additions and 356 deletions
Download Patch File Download Diff File Expand all files Collapse all files
Correct.h
+7 -5
View File
@@ -1389,7 +1389,13 @@ const ul_idx_t *uref, char* qstr, UC_Read *tu, overlap_region_alloc *ol, overlap
bit_extz_t *exz, double e_rate, int64_t qs);
void gen_hc_r_alin(overlap_region_alloc* ol, Candidates_list *cl, All_reads *rref, UC_Read* qu, UC_Read* tu, bit_extz_t *exz, overlap_region *aux_o, double e_rate, int64_t wl, int64_t rid, int64_t khit, int64_t move_gap, asg16_v* buf);
void rphase_hc(overlap_region_alloc* ol, All_reads *rref, haplotype_evdience_alloc* hp, UC_Read* qu, UC_Read* tu, kv_ul_ov_t *c_idx, asg64_v* idx, asg64_v* buf, int64_t bd, int64_t wl, int64_t ql, uint8_t occ_thres);
void gen_hc_r_alin_nec(overlap_region_alloc* ol, Candidates_list *cl, All_reads *rref, UC_Read* qu, UC_Read* tu, bit_extz_t *exz, overlap_region *aux_o, double e_rate, int64_t wl, int64_t rid, int64_t khit, int64_t move_gap, asg16_v* buf);
uint64_t gen_hc_r_alin_re(overlap_region* z, Candidates_list *cl, char* qstr, uint64_t ql, char* tstr, uint64_t tl, bit_extz_t *exz, overlap_region *aux_o, double e_rate, int64_t wl, int64_t rid, int64_t khit, int64_t move_gap, asg16_v* buf);
void rphase_hc(overlap_region_alloc* ol, All_reads *rref, haplotype_evdience_alloc* hp, UC_Read* qu, UC_Read* tu, kv_ul_ov_t *c_idx, asg64_v* idx, asg64_v* buf, int64_t bd, int64_t wl, int64_t ql, uint8_t occ_thres/**, uint8_t is_dbg**/, uint64_t rid);
void set_exact_exz(bit_extz_t *exz, int64_t qs, int64_t qe, int64_t ts, int64_t te);
void push_alnw(overlap_region *aux_o, bit_extz_t *exz);
void cal_exz_global(char *pstr, int32_t pn, char *tstr, int32_t tn, int32_t thre, bit_extz_t *ez);
#define ovlp_id(x) ((x).tn)
#define ovlp_min_wid(x) ((x).ts)
@@ -1400,9 +1406,5 @@ void rphase_hc(overlap_region_alloc* ol, All_reads *rref, haplotype_evdience_all
#define ovlp_cur_ylen(x) ((x).te)
#define ovlp_cur_coff(x) ((x).qe)
#define ovlp_bd(x) ((x).sec)
#define UC_Read_resize(v, s) do {\
if ((v).size<(s)) {REALLOC((v).seq,(s));(v).size=(s);}\
} while (0)
#endif