From ebedae2a214a53867a200ab18de34d7143f8fd95 Mon Sep 17 00:00:00 2001 From: Heng Li Date: Wed, 5 Aug 2020 17:33:14 -0400 Subject: [PATCH] updated Makefile --- Makefile | 11 ++++++++--- 1 file changed, 8 insertions(+), 3 deletions(-) diff --git a/Makefile b/Makefile index e108885..7da5789 100644 --- a/Makefile +++ b/Makefile @@ -1,5 +1,7 @@ CXX= g++ +CC= gcc CXXFLAGS= -g -O3 -msse4.2 -mpopcnt -fomit-frame-pointer -Wall +CFLAGS= $(CXXFLAGS) CPPFLAGS= INCLUDES= OBJS= CommandLines.o Process_Read.o Assembly.o Hash_Table.o \ @@ -13,12 +15,15 @@ ifneq ($(asan),) LIBS+=-fsanitize=address endif -.SUFFIXES:.cpp .o +.SUFFIXES:.cpp .c .o .PHONY:all clean depend .cpp.o: $(CXX) -c $(CXXFLAGS) $(CPPFLAGS) $(INCLUDES) $< -o $@ +.c.o: + $(CC) -c $(CFLAGS) $(CPPFLAGS) $(INCLUDES) $< -o $@ + all:$(EXE) $(EXE):$(OBJS) main.o @@ -36,8 +41,9 @@ Assembly.o: Assembly.h CommandLines.h Process_Read.h Overlaps.h kvec.h kdq.h Assembly.o: Hash_Table.h htab.h POA.h Correct.h Levenshtein_distance.h Assembly.o: kthread.h CommandLines.o: CommandLines.h ketopt.h -Correct.o: Correct.h Hash_Table.h htab.h Process_Read.h Overlaps.h kvec.h ksw2.h +Correct.o: Correct.h Hash_Table.h htab.h Process_Read.h Overlaps.h kvec.h Correct.o: kdq.h CommandLines.h Levenshtein_distance.h POA.h Assembly.h +Correct.o: ksw2.h Hash_Table.o: Hash_Table.h htab.h Process_Read.h Overlaps.h kvec.h kdq.h Hash_Table.o: CommandLines.h ksort.h Levenshtein_distance.o: Levenshtein_distance.h @@ -65,4 +71,3 @@ main.o: CommandLines.h Process_Read.h Overlaps.h kvec.h kdq.h Assembly.h main.o: Levenshtein_distance.h htab.h sketch.o: kvec.h htab.h Process_Read.h Overlaps.h kdq.h CommandLines.h sys.o: htab.h Process_Read.h Overlaps.h kvec.h kdq.h CommandLines.h -ksw2_extz2_sse.o: ksw2.h \ No newline at end of file