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clean purge_dups

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chhylp123
2021-04-03 16:26:58 -04:00
parent 46e899bbae
commit ebfc04d253
6 changed files with 478 additions and 120 deletions
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Overlaps.h
+4 -2
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@@ -289,10 +289,11 @@ static inline asg_arc_t *asg_arc_pushp(asg_t *g)
// set asg_arc_t::del for v->w
static inline void asg_arc_del(asg_t *g, uint32_t v, uint32_t w, int del)
{
uint32_t i, nv = asg_arc_n(g, v);
uint32_t i, nv = asg_arc_n(g, v)/**, found = 0**/;
asg_arc_t *av = asg_arc_a(g, v);
for (i = 0; i < nv; ++i)
if (av[i].v == w) av[i].del = !!del;
if (av[i].v == w) av[i].del = !!del/**, found = 1**/;
/**if(found == 0) fprintf(stderr, "ERROR\n");**/
}
// set asg_arc_t::del and asg_seq_t::del to 1 for sequence s and all its associated arcs
@@ -470,6 +471,7 @@ uint64_t* source_index, long long listLen);
typedef struct {
uint64_t len;
uint32_t* index;
uint8_t* is_het;
} R_to_U;
void init_R_to_U(R_to_U* x, uint64_t len);