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fix misassemblies

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chhylp123
2021-03-20 18:36:02 -04:00
parent e6e6dbf7b3
commit ede6ccef00
5 changed files with 210 additions and 286 deletions
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hic.h
+2 -2
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@@ -11,7 +11,7 @@
hc_edge* get_hc_edge(hc_links* link, uint64_t src, uint64_t dest, uint64_t dir);
void push_hc_edge(hc_linkeage* x, uint64_t uID, double weight, int dir, uint64_t* d);
void hic_analysis(ma_ug_t *ug, asg_t* read_g, hc_links* link);
void hic_analysis(ma_ug_t *ug, asg_t* read_g, hap_cov_t *cov);
void hic_benchmark(ma_ug_t *ug, asg_t* read_g);
typedef struct {
@@ -62,7 +62,7 @@ void get_bubbles(bubble_type* bub, uint64_t id, uint32_t* beg, uint32_t* sink, u
int load_hc_links(hc_links* link, const char *fn);
void write_hc_links(hc_links* link, const char *fn);
void destory_bubbles(bubble_type* bub);
void identify_bubbles(ma_ug_t* ug, bubble_type* bub, hc_links* link);
void identify_bubbles(ma_ug_t* ug, bubble_type* bub, uint8_t *het_flag);
void resolve_bubble_chain_tangle(ma_ug_t* ug, bubble_type* bub);
uint32_t connect_bub_occ(bubble_type* bub, uint32_t root_id, uint32_t check_het);
void get_bub_id(bubble_type* bub, uint32_t root, uint64_t* id0, uint64_t* id1, uint32_t check_het);