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seperate alignment

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chhylp123
2022-09-04 00:18:51 -04:00
parent cc16626dfa
commit ee51a6dddc
6 changed files with 925 additions and 61 deletions
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Hash_Table.h
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@@ -191,6 +191,7 @@ uint64_t lchain_dp(k_mer_hit* a, int64_t a_n, k_mer_hit* des, Chain_Data* dp, ov
int64_t max_skip, int64_t max_iter, int64_t max_dis, double chn_pen_gap, double chn_pen_skip, double bw_rate,
int64_t xl, int64_t yl, int64_t quick_check);
int ovlp_chain_gen(overlap_region_alloc* ol, overlap_region* t, int64_t xl, int64_t yl, int64_t apend_be, k_mer_hit* hit, int64_t n_hit);
void gen_fake_cigar(Fake_Cigar* z, overlap_region *o, int64_t apend_be, k_mer_hit* hit, int64_t n_hit);
int append_utg_inexact_overlap_region_alloc(overlap_region_alloc* list, overlap_region* tmp,
ma_utg_v *ua, int add_beg_end, void *km);