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bug fixing

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chhylp123
2021-04-16 22:26:28 -04:00
parent f8ee584291
commit efacf8e796
5 changed files with 68 additions and 1070 deletions
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rcut.cpp
+17 -4
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@@ -1305,20 +1305,25 @@ void mc_init_spin_all(const mc_opt_t *opt, mc_g_t *mg, mc_svaux_t *b)
void mc_solve_core(const mc_opt_t *opt, mc_g_t *mg, bubble_type* bub)
{
fprintf(stderr, "#######0#######\n");
double index_time = yak_realtime();
uint32_t st, i;
mc_svaux_t *b;
mc_bp_t *bp = NULL;
fprintf(stderr, "#######1#######\n");
mc_g_cc(mg->e);
fprintf(stderr, "#######2#######\n");
b = mc_svaux_init(mg, opt->seed);
fprintf(stderr, "#######3#######\n");
if(bub) bp = mc_bp_t_init(mg->e, b, bub, asm_opt.thread_num);
fprintf(stderr, "#######4#######\n");
/*******************************for debug************************************/
if(bp)
{
mc_init_spin_all(opt, mg, b);
mc_solve_bp(bp);
}
fprintf(stderr, "#######5#######\n");
/*******************************for debug************************************/
// fprintf(stderr, "\n\n\n\n\n*************beg-[M::%s::score->%f] ==> Partition\n", __func__, mc_score_all(mg->e, b));
for (st = 0, i = 1; i <= mg->e->n_seq; ++i) {
@@ -1328,11 +1333,14 @@ void mc_solve_core(const mc_opt_t *opt, mc_g_t *mg, bubble_type* bub)
}
}
// fprintf(stderr, "##############end-[M::%s::score->%f] ==> Partition\n", __func__, mc_score_all(mg->e, b));
fprintf(stderr, "#######6#######\n");
if(bp) mc_solve_bp(bp);
fprintf(stderr, "#######7#######\n");
///mc_write_info(g, b);
if(bp) mc_svaux_destroy(b);
destroy_mc_bp_t(&bp);
mc_svaux_destroy(b);
fprintf(stderr, "#######8#######\n");
if(bp) destroy_mc_bp_t(&bp);
fprintf(stderr, "#######9#######\n");
fprintf(stderr, "[M::%s::%.3f] ==> Partition\n", __func__, yak_realtime()-index_time);
}
@@ -1442,11 +1450,16 @@ void p_nodes(mc_g_t *mg, trans_chain* t_ch, uint8_t* trio_flag)
void mc_solve(hap_overlaps_list* ovlp, trans_chain* t_ch, kv_u_trans_t *ta, ma_ug_t *ug, asg_t *read_g, double f_rate, uint8_t* trio_flag, uint32_t renew_s, int8_t *s, uint32_t is_sys, bubble_type* bub)
{
mc_opt_t opt;
fprintf(stderr, "*****0******\n");
mc_opt_init(&opt, asm_opt.n_perturb, asm_opt.f_perturb, asm_opt.seed);
fprintf(stderr, "*****1******\n");
mc_g_t *mg = init_mc_g_t(ug, read_g, s, renew_s);
fprintf(stderr, "*****2******\n");
update_mc_edges(mg, ovlp, ta, t_ch, f_rate, is_sys);
fprintf(stderr, "*****3******\n");
///debug_mc_g_t(mg);
mc_solve_core(&opt, mg, bub);
fprintf(stderr, "*****4******\n");
if((asm_opt.flag & HA_F_PARTITION) && t_ch)
{