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r326: select high-occ k-mers (experimental)

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Heng Li
2020-10-29 22:36:54 -04:00
parent f37c4e29fa
commit f02eb66e6a
4 changed files with 59 additions and 20 deletions
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CommandLines.cpp
+1 -1
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@@ -102,7 +102,7 @@ void init_opt(hifiasm_opt_t* asm_opt)
asm_opt->k_mer_length = 51;
asm_opt->mz_win = 51;
asm_opt->bf_shift = 37;
asm_opt->max_kmer_cnt = 4000;
asm_opt->max_kmer_cnt = 2000;
asm_opt->high_factor = 5.0;
asm_opt->max_ov_diff_ec = 0.04;
asm_opt->max_ov_diff_final = 0.03;