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r192: estimate buffer memory

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Heng Li
2020-04-05 11:17:12 -04:00
parent 8c27dbb52f
commit f0c53e9948
9 changed files with 77 additions and 14 deletions
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6
Hash_Table.cpp
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@@ -389,9 +389,9 @@ int32_t ha_chain_lis_core(k_mer_hit *a, int32_t n_a, Chain_Data *dp, int32_t min
gap_rate = (double)tot_indel / tot_len;
score -= (int)(gap_rate * score * bw_thres);
dp->score[i] = dp->score[i-1] + score;
dp->pre[i] = i - 1;
dp->indels[i] = tot_indel;
dp->self_length[i] = tot_len;
dp->pre[i] = i - 1;
dp->indels[i] = tot_indel;
dp->self_length[i] = tot_len;
}
if (i < m) return -1;
for (i = 0; i < m; ++i) a[i] = a[b[i]];