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chhylp123
2022-09-20 22:48:59 -04:00
parent 4e7bb7eeb9
commit f4cc895fa0
7 changed files with 1232 additions and 137 deletions
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inter.cpp
+7 -4
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@@ -5606,7 +5606,7 @@ static void worker_for_ul_rescall_alignment(void *data, long i, int tid) // call
// if(s->id+i!=41927 && s->id+i!=47072 && s->id+i!=67641 && s->id+i!=90305 && s->id+i!=698342 && s->id+i!=329421) {
// return;
// }
// if((s->id+i!=43) /**&& (s->id+i!=44) && (s->id+i!=948)**/) return;
// if((s->id+i!=2154) /**&& (s->id+i!=44) && (s->id+i!=948)**/) return;
// fprintf(stderr, "\n[M::%s] rid::%ld, len::%lu, name::%.*s\n", __func__, s->id+i, s->len[i],
// (int32_t)UL_INF.nid.a[s->id+i].n, UL_INF.nid.a[s->id+i].a);
@@ -5629,13 +5629,16 @@ static void worker_for_ul_rescall_alignment(void *data, long i, int tid) // call
// memset(&b->self_read, 0, sizeof(b->self_read));
ul_lalign(&b->olist, &b->clist, s->uu, s->seq[i], s->len[i], &b->self_read, &b->ovlp_read,
&b->correct, &b->hap, &b->r_buf, s->opt->diff_ec_ul, winLen, 1, NULL);
&b->correct, &b->exz, &b->hap, &b->r_buf, s->opt->diff_ec_ul, winLen, 1, s->id+i, NULL);
// ul_lalign_old_ed(&b->olist, &b->clist, s->uu, s->seq[i], s->len[i], &b->self_read, &b->ovlp_read,
// &b->correct, &b->hap, &b->r_buf, s->opt->diff_ec_ul, winLen, 1, NULL);
gl_chain_flter(&b->olist, &b->correct, &(s->sps[tid]), bl, s->uu, s->opt->diff_ec_ul, winLen, s->len[i], s->uopt, &phase);
if(phase) {
ul_lalign(&b->olist, &b->clist, s->uu, s->seq[i], s->len[i], &b->self_read, &b->ovlp_read,
&b->correct, &b->hap, &b->r_buf, s->opt->diff_ec_ul, winLen, 0, NULL);
&b->correct, &b->exz, &b->hap, &b->r_buf, s->opt->diff_ec_ul, winLen, 0, s->id+i, NULL);
// ul_lalign_old_ed(&b->olist, &b->clist, s->uu, s->seq[i], s->len[i], &b->self_read, &b->ovlp_read,
// &b->correct, &b->hap, &b->r_buf, s->opt->diff_ec_ul, winLen, 0, NULL);
}
// exit(1);