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resure alignment

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This commit is contained in:
Haoyu Cheng
2019-07-12 10:18:25 -04:00
parent 3d88530385
commit f508762557
7 changed files with 1030 additions and 264 deletions
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Assembly.cpp
+6 -24
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@@ -773,8 +773,8 @@ void* Overlap_calculate_heap_merge(void* arg)
/************需要注释掉**********/
// debug_overlap = debug_overlap + list_length;
/************需要注释掉**********/
///append_k_mer_pos_list_alloc(&array_list, list, list_length, end_pos, 0);
append_k_mer_pos_list_alloc_prefilter(&array_list, list, list_length, end_pos, 0, &g_read, &R_INF, &correct);
append_k_mer_pos_list_alloc(&array_list, list, list_length, end_pos, 0);
///append_k_mer_pos_list_alloc_prefilter(&array_list, list, list_length, end_pos, 0, &g_read, &R_INF, &correct);
}
///merge_Candidates_list(&l, list, list_length, end_pos, 0);
///merge_Candidates_list_version(&debug_l, list, list_length, end_pos, 0);
@@ -833,8 +833,8 @@ void* Overlap_calculate_heap_merge(void* arg)
/************需要注释掉**********/
// debug_overlap = debug_overlap + list_length;
/************需要注释掉**********/
///append_k_mer_pos_list_alloc(&array_list, list, list_length, end_pos, 1);
append_k_mer_pos_list_alloc_prefilter(&array_list, list, list_length, end_pos, 1, &g_read, &R_INF, &correct);
append_k_mer_pos_list_alloc(&array_list, list, list_length, end_pos, 1);
///append_k_mer_pos_list_alloc_prefilter(&array_list, list, list_length, end_pos, 1, &g_read, &R_INF, &correct);
}
///merge_Candidates_list(&l, list, list_length, end_pos, 1);
//merge_Candidates_list_version(&debug_l, list, list_length, end_pos, 1);
@@ -879,24 +879,6 @@ void* Overlap_calculate_heap_merge(void* arg)
correct_overlap(&overlap_list, &R_INF, &g_read, &correct, &overlap_read,
&matched_overlap_0, &matched_overlap_1, &potiental_matched_overlap_0, &potiental_matched_overlap_1);
/**
for (j = 0; j < overlap_list.length; j++)
{
long long Len_x = overlap_list.list[j].x_pos_e - overlap_list.list[j].x_pos_s + 1;
if (Len_x * 0.9 <= overlap_list.list[j].align_length)
{
if (overlap_list.list[j].y_pos_strand == 0)
{
matched_overlap_0++;
}
else
{
matched_overlap_1++;
}
}
}
**/
/**
POA_i = 0;
@@ -994,8 +976,8 @@ void* Overlap_calculate_heap_merge(void* arg)
//destory_Candidates_list(&debug_l);
destory_Heap(&heap);
///destory_k_mer_pos_list_alloc(&array_list);
destory_k_mer_pos_list_alloc_prefilter(&array_list);
destory_k_mer_pos_list_alloc(&array_list);
///destory_k_mer_pos_list_alloc_prefilter(&array_list);
destory_Graph(&POA_Graph);
destory_UC_Read(&g_read);