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resure alignment

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Haoyu Cheng
2019-07-12 10:18:25 -04:00
parent 3d88530385
commit f508762557
7 changed files with 1030 additions and 264 deletions
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Correct.h
+5 -3
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@@ -4,9 +4,8 @@
#include "Hash_Table.h"
#include "Levenshtein_distance.h"
#define WINDOW 350
#define THRESHOLD 15
#define GROUP_SIZE 4
#define MAX(x, y) ((x >= y)?x:y)
#define MIN(x, y) ((x <= y)?x:y)
@@ -22,6 +21,9 @@ typedef struct
uint64_t start_i;
char overlap_region[WINDOW + THRESHOLD*2 + 10];
char overlap_region_group[GROUP_SIZE][WINDOW + THRESHOLD*2 + 10];
char path[WINDOW + THRESHOLD*2 + 10];
int path_length;
Word matrix_bit[((WINDOW + 10)<<3)];
__m128i Peq_SSE[256];
} Correct_dumy;