xxay/hifiasm
1
0
Fork 0
mirror of https://github.com/chhylp123/hifiasm.git synced 2026-09-30 15:38:11 +08:00
Code Issues Packages Projects Releases Wiki Activity

path-max and path-min to avoid misassemblies

Browse Source
This commit is contained in:
chhylp123
2023-03-13 11:13:57 -04:00
parent 3407c7029e
commit f67faa9c34
4 changed files with 34 additions and 9 deletions
Download Patch File Download Diff File Expand all files Collapse all files
Overlaps.cpp
+9
View File
@@ -34019,6 +34019,15 @@ ma_sub_t **coverage_cut_ptr, int debug_g)
output_contig_graph_primary_pre(sg, coverage_cut, o_file, sources, reverse_sources,
asm_opt.small_pop_bubble_size, asm_opt.max_short_tip, ruIndex, max_hang_length, mini_overlap_length, &uopt);
// if(asm_opt.ar) {
// char *op_file = get_outfile_name(o_file);
// ul_clean_gfa(&uopt, sg, sources, reverse_sources, ruIndex, clean_round, min_ovlp_drop_ratio, max_ovlp_drop_ratio,
// 0.6, asm_opt.max_short_tip, gap_fuzz, &b_mask_t, 0/**!!asm_opt.ar**/, ha_opt_triobin(&asm_opt), UL_COV_THRES, op_file);
// output_contig_graph_primary_pre(sg, coverage_cut, op_file, sources, reverse_sources,
// asm_opt.small_pop_bubble_size, asm_opt.max_short_tip, ruIndex, max_hang_length, mini_overlap_length, &uopt);
// free(op_file);
// }
/**
if (asm_opt.flag & HA_F_VERBOSE_GFA)
{