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chhylp123
2021-07-26 00:29:30 -04:00
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@@ -77,7 +77,7 @@ How can I tweak parameters to improve Hi-C integrated assembly?
Why the size of primary assembly or partially phased assembly is much larger than the estimated genome size? Why the size of primary assembly or partially phased assembly is much larger than the estimated genome size?
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It could be because the estimated genome size is incorrect. Another possibility is that hifiasm does not perform enough purging. Setting smaller value for ``-s`` (default: 0.55) or turning ``--purge-cov`` should be helpful. See :ref:`loginter` for more details. It could be because the estimated genome size is incorrect. Another possibility is that hifiasm does not perform enough purging. Setting smaller value for ``-s`` (default: 0.55) or turning ``--hom-cov`` should be helpful. See :ref:`loginter` for more details.
.. _p-hamming: .. _p-hamming: