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code clean

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chhylp123
2021-04-16 20:28:48 -04:00
parent 1e86e3dc02
commit f8ee584291
9 changed files with 1805 additions and 221 deletions
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Overlaps.cpp
+3 -13
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@@ -12578,7 +12578,7 @@ trans_chain* load_hc_hits(const char *fn)
fclose(fp);
free(buf);
fprintf(stderr, "[M::%s::] ==> Hi-C cov have been loaded\n", __func__);
// fprintf(stderr, "[M::%s::] ==> Hi-C cov have been loaded\n", __func__);
return t_ch;
}
@@ -12630,30 +12630,20 @@ bub_label_t* b_mask_t)
write_trans_chain(cov->t_ch, output_file_name);
}
hic_analysis(ug, sg, cov?cov->t_ch:t_ch);
fprintf(stderr, "sa-0-sa\n");
/**
char* gfa_name = (char*)malloc(strlen(output_file_name)+25);
sprintf(gfa_name, "%s.d_utg.noseq.gfa", output_file_name);
FILE* output_file = fopen(gfa_name, "w");
ma_ug_print_simple(ug, &R_INF, sg, coverage_cut, sources, ruIndex, "utg", output_file);
fclose(output_file);
free(gfa_name);
fprintf(stderr, "sa-1-sa\n");
**/
if(cov) destory_hap_cov_t(&cov);
if(t_ch) destory_trans_chain(&t_ch);
fprintf(stderr, "sa-2-sa\n");
ma_ug_destroy(ug);
kv_destroy(new_rtg_edges.a);