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code clean

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chhylp123
2021-04-16 20:28:48 -04:00
parent 1e86e3dc02
commit f8ee584291
9 changed files with 1805 additions and 221 deletions
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rcut.h
+17 -1
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@@ -5,6 +5,7 @@
#include "kvec.h"
#include "Overlaps.h"
#include "Purge_Dups.h"
#include "hic.h"
typedef struct {
uint32_t bS, bE;
@@ -42,5 +43,20 @@ typedef struct {
mc_match_t* e;
}mc_g_t;
void mc_solve(hap_overlaps_list* ovlp, trans_chain* t_ch, kv_u_trans_t *ta, ma_ug_t *ug, asg_t *read_g, double f_rate, uint8_t* trio_flag, uint32_t renew_s, int8_t *s, uint32_t is_sys);
static inline uint64_t kr_splitmix64(uint64_t x)
{
uint64_t z = (x += 0x9E3779B97F4A7C15ULL);
z = (z ^ (z >> 30)) * 0xBF58476D1CE4E5B9ULL;
z = (z ^ (z >> 27)) * 0x94D049BB133111EBULL;
return z ^ (z >> 31);
}
static inline double kr_drand_r(uint64_t *x)
{
union { uint64_t i; double d; } u;
*x = kr_splitmix64(*x);
u.i = 0x3FFULL << 52 | (*x) >> 12;
return u.d - 1.0;
}
void mc_solve(hap_overlaps_list* ovlp, trans_chain* t_ch, kv_u_trans_t *ta, ma_ug_t *ug, asg_t *read_g, double f_rate, uint8_t* trio_flag, uint32_t renew_s, int8_t *s, uint32_t is_sys, bubble_type* bub);
#endif