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update -z

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chhylp123
2021-02-02 12:45:50 -05:00
parent 02b9a3e109
commit fda13cb0e4
5 changed files with 615 additions and 339 deletions
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5
Assembly.cpp
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@@ -848,7 +848,8 @@ void ha_overlap_and_correct(int round)
b[i] = ha_ovec_init(0, (round == asm_opt.number_of_round - 1));
if(ha_idx) hom_cov = asm_opt.hom_cov;
if(ha_idx == NULL) ha_idx = ha_pt_gen(&asm_opt, ha_flt_tab, round == 0? 0 : 1, 0, &R_INF, &hom_cov, &het_cov); // build the index
if (round == 0 && ha_flt_tab == 0) // then asm_opt.hom_cov hasn't been updated
///debug_adapter(&asm_opt, &R_INF);
if (round == 0 && ha_flt_tab == 0) // then asm_opt.hom_cov hasn't been updated
ha_opt_update_cov(&asm_opt, hom_cov);
if (asm_opt.required_read_name)
kt_for(asm_opt.thread_num, worker_ovec_related_reads, b, R_INF.total_reads);
@@ -1600,6 +1601,8 @@ void ha_overlap_final(void)
asm_opt.het_cov = het_cov;
}
int ha_assemble(void)
{
extern void ha_extract_print_list(const All_reads *rs, int n_rounds, const char *o);