update coverage

This commit is contained in:
chhylp123
2020-07-13 22:34:26 -04:00
parent c01b593d7c
commit fda858f9e7
8 changed files with 449 additions and 104 deletions
+12 -1
View File
@@ -1,4 +1,4 @@
.TH hifiasm 1 "12 Apr 2020" "hifiasm-0.5.0" "Bioinformatics tools"
.TH hifiasm 1 "27 June 2020" "hifiasm-0.8 (r279)" "Bioinformatics tools"
.SH NAME
.PP
@@ -192,6 +192,12 @@ and do the assembly directly and quickly.
This might be helpful when users want to get an optimized assembly by multiple rounds of experiments
with different parameters.
.TP
.BI --pri-range \ INT,INT
Min and max coverage cutoff of primary contigs.
Keep contigs with coverage in this range at p_ctg.gfa.
Inferred automatically in default.
Set -1,-1 to disable
.SS Trio-partition options
@@ -252,6 +258,11 @@ Similarity threshold for duplicate haplotigs that should be purged [0.75].
.BI -O \ FLOAT
Min number of overlapped reads for duplicate haplotigs that should be purged [1].
.TP
.BI --purge-cov \ INT
Coverage upper bound of Purge-dups, which is inferred automatically in default.
If the coverage of a contig is higher than this bound, don't apply Purge-dups.
.SS Debugging options
.TP 10