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fix memory bug/logic bug

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chhylp123
2022-05-01 00:37:32 -04:00
parent 3064e1373b
commit fdf24d5589
11 changed files with 1472 additions and 142 deletions
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Process_Read.h
+2 -2
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@@ -160,7 +160,7 @@ typedef struct
typedef struct
{
uint32_t hid;
uint32_t qs, qe, ts, te; uint32_t pidx, pdis;
uint32_t qs, qe, ts, te; uint32_t pidx, pdis, aidx;///TODO: enable pdis
uint8_t pchain:5, rev:1, base:1, el:1;
} uc_block_t;
@@ -224,7 +224,7 @@ void recover_UC_sub_Read(UC_Read* i_r, long long start_pos, long long length, ui
void init_all_ul_t(all_ul_t *x, All_reads *hR);
void destory_all_ul_t(all_ul_t *x);
void append_ul_t(all_ul_t *x, uint64_t *rid, char* id, int64_t id_l, char* str, int64_t str_l, ul_ov_t *o, int64_t on, float p_chain_rate, const ug_opt_t *uopt);
void append_ul_t(all_ul_t *x, uint64_t *rid, char* id, int64_t id_l, char* str, int64_t str_l, ul_ov_t *o, int64_t on, float p_chain_rate, const ug_opt_t *uopt, uint32_t save_bases);
void retrieve_ul_t(UC_Read* i_r, char *i_s, all_ul_t *ref, uint64_t ID, uint8_t strand, int64_t s, int64_t l);
void retrieve_u_seq(UC_Read* i_r, char* i_s, ma_utg_t *u, uint8_t strand, int64_t s, int64_t l, void *km);
void debug_retrieve_rc_sub(const ug_opt_t *uopt, all_ul_t *ref, const All_reads *R_INF, ul_idx_t *ul, uint32_t n_step);