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position indexing apparently working

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Heng Li
2020-03-25 23:44:15 -04:00
parent 716713685c
commit ff8194d291
4 changed files with 115 additions and 54 deletions
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htab.h
+1 -3
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@@ -3,9 +3,6 @@
#define __STDC_LIMIT_MACROS
#include <stdint.h>
#define YAK_BLK_SHIFT 9 // 64 bytes, the size of a cache line
#define YAK_BLK_MASK ((1<<(YAK_BLK_SHIFT)) - 1)
typedef struct {
uint64_t x;
uint64_t rid:28, pos:27, rev:1, span:8;
@@ -21,6 +18,7 @@ extern const unsigned char seq_nt4_table[256];
int ha_ft_isflt(const void *hh, uint64_t y);
void ha_ft_destroy(void *h);
void ha_idx_destroy(void *h);
void trio_partition(void);