From ffba3ce0efae74fd9c6415165641e276b65497cf Mon Sep 17 00:00:00 2001 From: Heng Li Date: Fri, 3 Apr 2020 10:42:09 -0400 Subject: [PATCH] r182: explain -N --- CommandLines.cpp | 1 + CommandLines.h | 2 +- 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/CommandLines.cpp b/CommandLines.cpp index c6260a4..fab4cd3 100644 --- a/CommandLines.cpp +++ b/CommandLines.cpp @@ -29,6 +29,7 @@ void Print_H(hifiasm_opt_t* asm_opt) fprintf(stderr, " -w INT minimizer window size [%d]\n", asm_opt->mz_win); fprintf(stderr, " -f INT number of bits for bloom filter [%d]\n", asm_opt->bf_shift); fprintf(stderr, " -D FLOAT drop k-mers occuring >FLOAT*coverage times [%.1f]\n", asm_opt->high_factor); + fprintf(stderr, " -N INT consider up to INT overlaps for each oriented read [%d]\n", asm_opt->max_n_chain); ///fprintf(stderr, " -l load all overlaps from disk, can avoid overlap calculation [%d]\n", asm_opt->load_index_from_disk); ///fprintf(stderr, " -i ignore saved overlaps in *.ovlp*.bin files\n"); fprintf(stderr, " -i ignore saved overlaps in *.ovlp* files\n"); diff --git a/CommandLines.h b/CommandLines.h index ad150d0..83a0c5e 100644 --- a/CommandLines.h +++ b/CommandLines.h @@ -3,7 +3,7 @@ #include -#define HA_VERSION "0.3.0-dirty-r181" +#define HA_VERSION "0.3.0-dirty-r182" #define VERBOSE 0 #define VERBOSE_GFA 0