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Author	SHA1	Message	Date
chhylp123	69d0e18fe5	ed macro	2022-09-14 15:38:55 -04:00
chhylp123	2300dc63bb	extension	2022-09-14 00:23:44 -04:00
chhylp123	5da05f308f	extend ed alignment	2022-09-13 17:29:27 -04:00
chhylp123	ee51a6dddc	seperate alignment	2022-09-04 00:18:51 -04:00
chhylp123	cc16626dfa	debug cigar_offset	2022-09-01 23:16:08 -04:00
chhylp123	7b89478b2e	code clean	2022-08-28 02:39:05 -04:00
chhylp123	8b7ca5f0c3	revised HiFi phasing	2022-08-23 10:36:35 -04:00
chhylp123	54465dd9ac	tangle resolved	2022-08-16 23:35:56 -04:00
chhylp123	89e0d1aafa	UL graph with graph cleaning	2022-08-02 15:48:16 -04:00
chhylp123	91de382bde	before contain keeping	2022-07-27 10:41:57 -04:00
chhylp123	239f087af0	exact ul ovlp	2022-07-26 20:57:34 -04:00
chhylp123	33afa25398	UL graph done	2022-07-24 18:13:16 -04:00
chhylp123	138610b049	ul coordinates fixed	2022-06-25 21:52:56 -04:00
chhylp123	0a8c064734	read alignment extension debugging	2022-06-24 18:07:15 -04:00
chhylp123	a82e05c9f2	fix gap alignment extention	2022-06-23 22:11:28 -04:00
chhylp123	3934167770	integer correction update	2022-06-20 01:51:19 -04:00
chhylp123	a21bc8a336	correction done	2022-06-18 22:42:01 -04:00
chhylp123	7cf6d82115	init poa	2022-06-15 16:58:23 -04:00
chhylp123	98bb89227e	integer correction	2022-06-07 16:56:28 -04:00
chhylp123	8f1c59a5da	all alignments have done/been improved	2022-05-16 20:58:29 -04:00
chhylp123	74ad15846e	small bugs fixed	2022-05-14 22:07:55 -04:00
chhylp123	832e43fe3b	smaller cigar size	2022-05-12 18:31:31 -04:00
chhylp123	a2198891e7	smaller memory requirement	2022-05-12 16:15:58 -04:00
chhylp123	dd8888aa90	backup for memory issues	2022-05-05 19:35:06 -04:00
chhylp123	8a2bb0b112	memory debugging	2022-05-04 20:22:50 -04:00
chhylp123	e8399b18f1	fixed duplicated chaining issue	2022-05-03 17:35:43 -04:00
chhylp123	8138941a26	new realignment	2022-05-03 00:59:24 -04:00
chhylp123	fdf24d5589	fix memory bug/logic bug	2022-05-01 00:37:32 -04:00
chhylp123	3064e1373b	better uovlp saving	2022-04-22 23:10:21 -04:00
chhylp123	d862711623	update graph chain	2022-04-16 22:17:52 -04:00
chhylp123	9c79bdfe7f	UL_gdp	2022-04-13 16:15:03 -04:00
chhylp123	75f8048b18	UL g-alignment-v1	2022-03-26 18:51:46 -04:00
chhylp123	95eb2de2b9	roughly right chaining	2022-03-25 00:29:58 -04:00
chhylp123	60236cd967	debug uc_block_t	2022-03-21 22:00:30 -04:00
chhylp123	d3b9de4120	new gchain	2022-03-16 01:13:27 -04:00
chhylp123	9c6a3607d1	intergration correctio	2022-03-01 20:25:53 -05:00
chhylp123	0ce5a7ba5b	integration/print het sites	2022-01-17 18:29:48 -05:00
chhylp123	7af0d85258	backup	2021-12-29 21:22:43 -05:00
chhylp123	dbc72b8c2d	has bug multiple threads	2021-12-28 21:48:41 -05:00
chhylp123	8a0ec3d575	change ug extraction	2021-12-12 20:59:48 -05:00
chhylp123	9ec286e64e	new ul	2021-12-11 14:55:36 -05:00
chhylp123	b640289b19	better read phasing	2021-12-07 22:47:52 -05:00
chhylp123	1e2a9518e5	print dup log	2021-11-29 15:11:02 -05:00
chhylp123	763634e1a9	kpt_dup	2021-11-28 19:35:32 -05:00
chhylp123	26aacdcc2c	correct gchains	2021-10-14 15:33:16 -04:00
chhylp123	908b4f3786	bug fix	2021-10-10 14:47:16 -04:00
chhylp123	cb320b88f3	debug ul	2021-10-10 13:37:32 -04:00
chhylp123	7dd4a848b9	debug graph	2021-09-26 13:51:13 -04:00
chhylp123	ed814abf35	before branch	2021-09-16 17:16:30 -04:00
chhylp123	ab80851b94	mempcpy -> memcpy 0.16.1	2021-09-12 17:43:43 -04:00