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mirror of https://github.com/chhylp123/hifiasm.git synced 2026-09-26 04:18:12 +08:00
Code Issues Packages Projects Releases Wiki Activity
180 Commits 11 Branches 54 Tags
483ceb852c11bbae1ca65ff6ddb63fbb8760d2ca
Commit Graph
22 Commits
Author SHA1 Message Date
Heng Li 483ceb852c r179: replace one qsort() with ks_introsort() 2020-04-02 10:34:43 -04:00
Heng Li 7776dee103 r178: speedup chaining 2020-04-02 09:30:23 -04:00
Heng Li 878fe943c3 r177: combine the hifiasm and minimap2 heuristics 2020-04-01 23:07:42 -04:00
Heng Li b7e5d1c4d3 r176: enabled the minimap2 chaining heuristic 2020-04-01 22:06:14 -04:00
Heng Li e75b93ae12 r175: start versioning 2020-03-28 11:52:14 -04:00
Heng Li 5e16483b43 option to skip k-mer filtering 2020-03-27 22:32:39 -04:00
Heng Li 79bc553da6 removed hifiasm hash table index 2020-03-26 16:10:01 -04:00
Heng Li 3e897560c4 minimizer filtering apparently works 2020-03-25 00:38:13 -04:00
Heng Li f70257c260 support HPC k-mer 2020-03-24 19:58:21 -04:00
Heng Li 64edb06e08 NOT WORKING!!! added all k-mer counter 2020-03-24 12:29:46 -04:00
chhylp123 c72d419711 for hifiasm 3.0 2020-03-22 16:54:32 -04:00
chhylp123 c63ce670f7 improved N50 2020-01-14 10:59:51 -05:00
Haoyu Cheng d8416873f3 upadate man-page and readme 2020-01-04 11:54:08 +08:00
Haoyu Cheng 1523d10291 README 2019-12-28 04:45:53 -05:00
Haoyu Cheng 4ac9907e49 clean code 2019-12-26 02:26:24 -05:00
Haoyu Cheng ada03ea388 final DP-based assembly 2019-11-13 20:18:11 -05:00
Haoyu Cheng d5327fe9ee phasing 2019-09-02 10:30:14 -04:00
Haoyu Cheng 17553e0a42 S/L index&reads 2019-05-16 21:14:50 -04:00
Haoyu Cheng 45355a1103 Update position hash table 2019-05-14 17:02:03 -04:00
Haoyu Cheng 9302fc6058 Finish multiple thread counting 2019-05-12 02:16:20 -04:00
Haoyu Cheng 94bd75e576 Multiple threads reading 2019-05-11 00:19:16 -04:00
Haoyu Cheng 0b209dd1e9 Input reads 2019-05-10 00:11:19 -04:00