#ifndef __COMMAND_LINE_PARSER__
#define __COMMAND_LINE_PARSER__

#include <pthread.h>

#define VERBOSE 0

typedef struct {
    char* read_file_name;
    char* output_file_name;
    char* required_read_name;
    int thread_num;
    int k_mer_length;
    int k_mer_min_freq;
    int k_mer_max_freq;
    int load_index_from_disk;
    int write_index_to_disk;
    int number_of_round;
    int adapterLen;
    int clean_round;
    int complete_threads;
    int roundID;
    float min_drop_rate;
    float max_drop_rate;

    long long pop_bubble_size;
    long long num_bases;
    long long num_corrected_bases;
    long long num_recorrected_bases;
} hifiasm_opt_t;

extern hifiasm_opt_t asm_opt;

void init_opt(hifiasm_opt_t* asm_opt);
void clear_opt(hifiasm_opt_t* asm_opt, int last_round);
int CommandLine_process (int argc, char *argv[], hifiasm_opt_t* asm_opt);
double Get_T(void);

#endif