#ifndef __ASSEMBLY__
#define __ASSEMBLY__

#define FORWARD 0
#define REVERSE_COMPLEMENT (0x8000000000000000)

#define Get_Cigar_Type(RECORD) (RECORD&3)
#define Get_Cigar_Length(RECORD) (RECORD>>2)

void Counting_multiple_thr();
void Build_hash_table_multiple_thr();
int load_pre_cauculated_index();
void Overlap_calculate_multipe_thr();
void Correct_Reads(int last_round);

/********************************for debug***************************************/
void Verify_Counting();

/********************************for debug*****************************************/
void verify_Position_hash_table();
#endif