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24 lines
897 B
C
24 lines
897 B
C
#ifndef __ECOVLP_PARSER__
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#define __ECOVLP_PARSER__
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#define __STDC_LIMIT_MACROS
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#include <stdint.h>
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#include "Hash_Table.h"
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#include "Process_Read.h"
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#include "kdq.h"
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void prt_chain(overlap_region_alloc *o);
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void cal_ec_r(uint64_t n_thre, uint64_t round, uint64_t n_round, uint64_t n_a, uint64_t is_sv, uint64_t *tot_b, uint64_t *tot_e);
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void sl_ec_r(uint64_t n_thre, uint64_t n_a);
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void cal_ov_r(uint64_t n_thre, uint64_t n_a, uint64_t new_idx);
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void handle_chemical_r(uint64_t n_thre, uint64_t n_a);
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void handle_chemical_arc(uint64_t n_thre, uint64_t n_a);
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uint8_t* gen_chemical_arc_rf(uint64_t n_thre, uint64_t n_a);
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void cal_ec_r_dbg(uint64_t n_thre, uint64_t n_a);
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void write_ec_reads(const char *suffix_ou, cc_v *cvt, uint8_t is_rev);
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void destroy_cc_v(cc_v *z);
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void gen_gfa_bam(ma_ug_t *ug, uint64_t n_a);
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void clean_arc_rf(uint64_t n_thre, uint64_t n_a);
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#endif |