hifiasm/Makefile

CXX=		g++
CXXFLAGS=	-g -O3 -msse4.2 -mpopcnt -fomit-frame-pointer -Wall
CPPFLAGS=
INCLUDES=
OBJS=		Output.o CommandLines.o Process_Read.o Assembly.o Hash_Table.o \
			POA.o Correct.o Levenshtein_distance.o Overlaps.o Trio.o kthread.o Purge_Dups.o \
			htab.o hist.o sketch.o anchor.o sys.o
EXE=		hifiasm
LIBS=		-lz -lpthread -lm

ifneq ($(asan),)
	CXXFLAGS+=-fsanitize=address
	LIBS+=-fsanitize=address
endif

.SUFFIXES:.cpp .o
.PHONY:all clean depend

.cpp.o:
		$(CXX) -c $(CXXFLAGS) $(CPPFLAGS) $(INCLUDES) $< -o $@

all:$(EXE)

$(EXE):$(OBJS) main.o
		$(CXX) $(CXXFLAGS) $^ -o $@ $(LIBS)

clean:
		rm -fr gmon.out *.o a.out $(EXE) *~ *.a *.dSYM

depend:
		(LC_ALL=C; export LC_ALL; makedepend -Y -- $(CPPFLAGS) $(DFLAGS) -- *.cpp)

# DO NOT DELETE