mirror of
https://github.com/chhylp123/hifiasm.git
synced 2026-09-15 12:47:57 +08:00
56 lines
2.0 KiB
Makefile
56 lines
2.0 KiB
Makefile
CXX= g++
|
|
CXXFLAGS= -g -O3 -msse4.2 -mpopcnt -fomit-frame-pointer -Wall #-fsanitize=address -fno-omit-frame-pointer#-Winline
|
|
CPPFLAGS=
|
|
INCLUDES=
|
|
OBJS= Output.o CommandLines.o Process_Read.o Assembly.o kmer.o Hash_Table.o \
|
|
POA.o Correct.o Levenshtein_distance.o Overlaps.o Trio.o kthread.o #ksw2_extz2_sse.o
|
|
EXE= hifiasm
|
|
LIBS= -lz -lpthread -lm #-fsanitize=address -fno-omit-frame-pointer
|
|
|
|
ifneq ($(asan),)
|
|
CXXFLAGS+=-fsanitize=address
|
|
LIBS+=-fsanitize=address
|
|
endif
|
|
|
|
.SUFFIXES:.cpp .o
|
|
.PHONY:all clean depend
|
|
|
|
.cpp.o:
|
|
$(CXX) -c $(CXXFLAGS) $(CPPFLAGS) $(INCLUDES) $< -o $@
|
|
|
|
all:$(EXE)
|
|
|
|
$(EXE):$(OBJS) main.o
|
|
$(CXX) $(CXXFLAGS) $^ -o $@ $(LIBS)
|
|
|
|
clean:
|
|
rm -fr gmon.out *.o a.out $(EXE) *~ *.a *.dSYM
|
|
|
|
depend:
|
|
(LC_ALL=C; export LC_ALL; makedepend -Y -- $(CPPFLAGS) $(DFLAGS) -- *.cpp)
|
|
|
|
# DO NOT DELETE
|
|
|
|
Assembly.o: Assembly.h Process_Read.h kseq.h Overlaps.h kvec.h kdq.h
|
|
Assembly.o: CommandLines.h kmer.h Hash_Table.h khash.h POA.h Correct.h
|
|
Assembly.o: Levenshtein_distance.h Output.h Trio.h
|
|
CommandLines.o: CommandLines.h ketopt.h
|
|
Correct.o: Correct.h Hash_Table.h khash.h kmer.h Process_Read.h kseq.h
|
|
Correct.o: Overlaps.h kvec.h kdq.h CommandLines.h Levenshtein_distance.h
|
|
Correct.o: POA.h Assembly.h #ksw2.h
|
|
Hash_Table.o: Hash_Table.h khash.h kmer.h Process_Read.h kseq.h Overlaps.h
|
|
Hash_Table.o: kvec.h kdq.h CommandLines.h Correct.h Levenshtein_distance.h
|
|
Hash_Table.o: POA.h ksort.h
|
|
Levenshtein_distance.o: Levenshtein_distance.h
|
|
Output.o: Output.h CommandLines.h
|
|
Overlaps.o: Overlaps.h kvec.h kdq.h ksort.h Process_Read.h kseq.h
|
|
Overlaps.o: CommandLines.h
|
|
POA.o: POA.h Hash_Table.h khash.h kmer.h Process_Read.h kseq.h Overlaps.h
|
|
POA.o: kvec.h kdq.h CommandLines.h Correct.h Levenshtein_distance.h
|
|
Process_Read.o: Process_Read.h kseq.h Overlaps.h kvec.h kdq.h CommandLines.h
|
|
kmer.o: kmer.h Process_Read.h kseq.h Overlaps.h kvec.h kdq.h CommandLines.h
|
|
main.o: CommandLines.h Process_Read.h kseq.h Overlaps.h kvec.h kdq.h
|
|
main.o: Assembly.h Levenshtein_distance.h
|
|
Trio.o: Trio.h khashl.h kthread.h Process_Read.h CommandLines.h
|
|
kthread.o: kthread.h
|
|
#ksw2_extz2_sse.o: ksw2.h
|