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21 lines
422 B
C
21 lines
422 B
C
#ifndef __ASSEMBLY__
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#define __ASSEMBLY__
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#include "CommandLines.h"
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#include "Overlaps.h"
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#define FORWARD 0
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#define REVERSE_COMPLEMENT (0x8000000000000000)
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#define Get_Cigar_Type(RECORD) (RECORD&3)
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#define Get_Cigar_Length(RECORD) (RECORD>>2)
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#define RESEED_DP 4
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#define RESEED_PEAK_RATE 0.15
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#define RESEED_LEN 2000
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#define RESEED_HP_RATE 0.9
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int ha_assemble(void);
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void ug_idx_build(ma_ug_t *ug, int hap_n);
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#endif
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