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27 lines
618 B
C
27 lines
618 B
C
#ifndef __CORRECT__
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#define __CORRECT__
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#include <stdint.h>
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#include "Hash_Table.h"
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#define WINDOW 350
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#define THRESHOLD 15
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typedef struct
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{
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uint64_t* overlapID;
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uint64_t length;
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uint64_t lengthNT;
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uint64_t size;
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uint64_t start_i;
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char overlap_region[WINDOW + THRESHOLD*2 + 10];
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} Correct_dumy;
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void correct_overlap(overlap_region_alloc* overlap_list, All_reads* R_INF, UC_Read* g_read, Correct_dumy* dumy);
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void init_Correct_dumy(Correct_dumy* list);
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void destory_Correct_dumy(Correct_dumy* list);
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void clear_Correct_dumy(Correct_dumy* list, overlap_region_alloc* overlap_list);
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#endif |