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Author SHA1 Message Date
Alok Saldanha
9c38e48c5c prepare for 0.3.8 release v0.3.8 2021-12-21 12:19:02 -05:00
Alok Saldanha
073f5f945c #57 changed logic to take last path element 2021-12-21 12:05:01 -05:00
Alok Saldanha
9dc4409f1a #57 added failing unit test 2021-12-21 12:03:39 -05:00
Alok Saldanha
551cb46af8 #42 add support for is_authorized hook 2021-11-14 17:28:10 -05:00
Alok Saldanha
620181ae4d prepare for 0.3.7 release v0.3.7 2021-08-12 14:02:26 -04:00
Alok Saldanha
73a7920cc8 add back ip_address endpoint 2021-08-12 13:58:19 -04:00
Alok Saldanha
ed3e999cd1 prepare for 0.3.6 release v0.3.6 2021-07-18 10:42:42 -04:00
Alok Saldanha
2ae2e53863 Pin version of workzeug 
This is required by earlier flask-api versions

  File "/home/alokito/code/cellxgene-gateway/cellxgene_gateway/gateway.py", line 25, in <module>
    from flask_api import status
  File "/home/alokito/miniconda3/envs/cellxgene-gateway/lib/python3.7/site-packages/flask_api/__init__.py", line 1, in <module>
    from flask_api.app import FlaskAPI
  File "/home/alokito/miniconda3/envs/cellxgene-gateway/lib/python3.7/site-packages/flask_api/app.py", line 6, in <module>
    from flask_api.request import APIRequest
  File "/home/alokito/miniconda3/envs/cellxgene-gateway/lib/python3.7/site-packages/flask_api/request.py", line 9, in <module>
    from werkzeug._compat import to_unicode
ModuleNotFoundError: No module named 'werkzeug._compat'
 2021-07-18 10:32:10 -04:00
Alok Saldanha
fd0e7d9c31 preparing for 0.3.5 release 0.3.5 2021-07-18 09:43:45 -04:00
Alok Saldanha
98ef6efd0c pinned version of flask, to match cellxgene 2021-07-18 09:39:52 -04:00
Alok Saldanha
82e43ff943 preparing for 0.3.4 release v0.3.4 2021-07-18 09:15:27 -04:00
Alok Saldanha
f8a77423eb Merge pull request #51 from Novartis/nested_subdirs 
Enable listing nested subdirs
 2021-07-18 09:14:16 -04:00
Alok Saldanha
0375a717c9 #50 fixed bug in listing subdirs 2021-07-18 09:04:36 -04:00
Alok Saldanha
4bf57832a0 #50 added failing test for listing subdirs 2021-07-18 08:51:37 -04:00
Alok Saldanha
b7d14dba6a preparing for 0.3.3 release 0.3.3 2021-07-12 20:03:14 -04:00
Alok Saldanha
26286f94b1 Merge pull request #49 from Novartis/fix_cache_pruning 
Fix cache pruning
 2021-07-12 19:26:53 -04:00
Alok Saldanha
264a324946 #48 fix bug in cache pruning 2021-07-12 19:19:29 -04:00
Alok Saldanha
520069a825 #48 added failing test for cache pruning 2021-07-12 19:12:52 -04:00
Alok Saldanha
3cb0e4d725 added test for is_port_in_use 2021-05-11 07:27:30 -04:00
Alok Saldanha
d2b508e371 Create SECURITY.md 2021-05-06 05:02:36 -04:00
Alok Saldanha
e74f6d01d1 added unit tests for dir_util 2021-04-23 07:14:09 -04:00
Alok Saldanha
7b799d0159 removed unused code 2021-04-23 07:00:53 -04:00
Alok Saldanha
1f0885afdd added pypi badges to Readme.md 2021-04-22 19:16:05 -04:00
Alok Saldanha
a3a1a2d095 Preparing for 0.3.2 release v0.3.2 2021-04-22 19:01:07 -04:00
Alok Saldanha
b4739b0cbb Merge pull request #46 from Novartis/nested_s3 
This PR should address https://github.com/Novartis/cellxgene-gateway/issues/45
 2021-04-22 07:06:17 -04:00
Alok Saldanha
c29e5c0d92 #45 implemented test__list_items__pass_filter_into_scan_directory 2021-04-22 06:59:08 -04:00
Alok Saldanha
a3e3b6cea8 #45 implemented test__scan_directory__properly_recurses_suburls 2021-04-21 08:21:46 -04:00
Alok Saldanha
687dc31b7a improved error message on invalid extra scripts 2021-04-21 06:21:26 -04:00
Alok Saldanha
68da42ae0e #45 implemented test_GIVEN_some_filter_THEN_includes_filterpart_in_heading 2021-04-20 13:32:28 -04:00
Alok Saldanha
ccf1ba58a8 #45 add extra_scripts to cache_status page 2021-04-20 13:17:37 -04:00
Alok Saldanha
d072034911 #45 pass filter into scan_directory 
also include filterpart in heading
 2021-04-20 06:03:16 -04:00
Alok Saldanha
1200629d74 #45 handle keys as full subpath rather than last path element 2021-04-20 05:57:48 -04:00
Alok Saldanha
dba13ccacd lowering threshold due to including of itemsource modules 2021-04-05 08:10:55 -04:00
Alok Saldanha
3239aefad4 Preparing for v0.3.1 release v0.3.1 2021-04-05 08:06:25 -04:00
Alok Saldanha
dd727a9469 added missing __init__.py 2021-04-05 08:04:48 -04:00
Alok Saldanha
ae5cf09d04 Preparing for 0.3.0 release v0.3.0 2021-04-05 07:55:20 -04:00
Alok Saldanha
ae35d24d80 only set wsgi.url_scheme when EXTERNAL_PROTOCOL is set 2021-04-05 07:55:20 -04:00
Alokito
ad3517f002 Create codeql-analysis.yml 2021-04-05 07:08:34 -04:00
Alok Saldanha
2cefc6d741 added token and path to codecov upload 2021-04-05 06:53:44 -04:00
Alok Saldanha
1586c9a3e8 added code coverage badge 2021-04-04 20:03:02 -04:00
Alok Saldanha
f16bd5e2b9 added test for SubprocessBackend.launch 2021-04-04 19:48:13 -04:00
Alok Saldanha
10105c43a8 added support for code coverage 2021-04-04 14:55:13 -04:00
Alokito
638923fb43 Merge pull request #44 from Novartis/itemsource 
Itemsource
 2021-04-03 07:15:35 -04:00
Alok Saldanha
169da934b1 updated annotation.js comment 2021-04-03 07:12:50 -04:00
Alok Saldanha
33331c9198 Template has correct relaunch_url. 2021-04-03 07:08:20 -04:00
Alok Saldanha
d2d22cecaa updated tests, formatting 2021-04-02 11:52:49 -04:00
Alok Saldanha
5c488d8d5e only include source path element in url when multiple sources 2021-04-02 11:40:11 -04:00
Alok Saldanha
b1ae9e8ce8 ensure s3 bucket does not include trailing slash 2021-04-02 11:37:11 -04:00
Alok Saldanha
76c1d9e80c removed .csv suffix from annotation name 2021-03-29 07:28:16 -04:00
Alok Saldanha
586dc6623a ensure annotation directory for new annotations 2021-03-29 07:03:05 -04:00