#79 added cellxgene-data directory so it actually works

#79 add simple example to customize cellxgene-gateway ui
prepare for 0.3.10 release
2026-09-16 05:17:55 +08:00 · 2022-12-21 16:02:50 -05:00 · 2022-12-21 15:42:13 -05:00 · 2022-06-20 21:50:42 -04:00 · 2022-06-20 21:50:28 -04:00
5 changed files with 39 additions and 1 deletions
--- a/Changelog.md
+++ b/Changelog.md
@@ -1,3 +1,10 @@
+# 0.3.10
+
+* #65 Added GATEWAY_EXPIRE_SECONDS to set how long cellxgene servers can remain idle before being terminated.
+* Added GATEWAY_LOG_LEVEL to set the log level
+* #68 Close connections after reading response
+* #68 Background thread reads from output of cellxgene process until it exits
+
 # 0.3.9

 * Added S3_ENABLE_LISTINGS_CACHE variable (See README.md)
--- a/cellxgene_gateway/init.py
+++ b/cellxgene_gateway/init.py
@@ -7,4 +7,4 @@
 # OR CONDITIONS OF ANY KIND, either express or implied. See the License for
 # the specific language governing permissions and limitations under the License.

-__version__ = "0.3.9"
+__version__ = "0.3.10"
--- a/examples/customized_docker_image/Dockerfile
+++ b/examples/customized_docker_image/Dockerfile
@@ -0,0 +1,14 @@
+FROM python:3.9
+
+RUN pip install cellxgene-gateway 'MarkupSafe<2.1'
+
+COPY customize_ui.sh customize_ui.sh
+RUN CELLXGENE_GATEWAY_DIR=/usr/local/lib/python3.9/site-packages/cellxgene_gateway . ./customize_ui.sh
+
+ENV CELLXGENE_DATA=/cellxgene-data
+ENV CELLXGENE_LOCATION=/usr/local/bin/cellxgene
+EXPOSE 5005
+
+RUN mkdir /cellxgene-data
+
+CMD ["cellxgene-gateway"]
--- a/examples/customized_docker_image/README.md
+++ b/examples/customized_docker_image/README.md
@@ -0,0 +1,14 @@
+# Purpose
+
+This is a simple example of how to make a small script to customize the UI of cellxgene-gateway. The script that does the customization is `customize_ui.sh`, it simply makes the main header green using CSS but you could do anything you want there (including adding more script tags, etc).
+
+# Usage
+
+```
+docker build -t cellxgene_custom .
+CELLXGENE_DATA=`pwd`/../../../cellxgene_data
+docker run -p 5005:5005 --mount src=$CELLXGENE_DATA,target=/cellxgene-data,type=bind cellxgene_custom
+```
+
+If you now open http://localhost:5005 you should see a green cellxgene gateway header.
+
--- a/examples/customized_docker_image/customize_ui.sh
+++ b/examples/customized_docker_image/customize_ui.sh
@@ -0,0 +1,3 @@
+# make the header bright green
+find "${CELLXGENE_GATEWAY_DIR}/templates" -name index.html -exec sed -i -e 's/<head>/<head>\
+> <style> header h3 {color: #0F0;} <\/style>/g' {} \;
Author	SHA1	Message	Date
Alok Saldanha	f296efcc55	#79 added cellxgene-data directory so it actually works	2022-12-21 16:02:50 -05:00
Alok Saldanha	facfb27d5c	#79 add simple example to customize cellxgene-gateway ui	2022-12-21 15:42:13 -05:00
Alok Saldanha	390fe24ea4	prepare for 0.3.10 release	2022-06-20 21:50:42 -04:00
Alok Saldanha	590565bea2	Merge pull request #69 from Novartis/68_read_from_subprocess 68 read from subprocess	2022-06-20 21:50:28 -04:00