mirror of
https://github.com/chanzuckerberg/cellxgene.git
synced 2026-09-15 12:47:56 +08:00
Componentize bar charts (#1557)
* create miniHistogram Component * use MiniHistogram * create MiniStackedBar Component * Use MiniStackedBar * update graphs on colorAccessor change * Move bin creation out of miniHistogram * rename expressionLabel * breakout stackedbar bin creation * Trigger workflow * move components to individual folders * rename constant
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commit
23619010c3
@@ -1,5 +1,6 @@
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import { connect } from "react-redux";
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import React from "react";
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import * as d3 from "d3";
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import {
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Button,
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@@ -10,7 +11,6 @@ import {
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Icon,
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PopoverInteractionKind,
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} from "@blueprintjs/core";
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import Occupancy from "./occupancy";
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import * as globals from "../../../globals";
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import styles from "../categorical.css";
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import AnnoDialog from "../annoDialog";
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@@ -19,6 +19,8 @@ import Truncate from "../../util/truncate";
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import { AnnotationsHelpers } from "../../../util/stateManager";
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import { labelPrompt, isLabelErroneous } from "../labelUtil";
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import MiniHistogram from "../../miniHistogram";
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import MiniStackedBar from "../../miniStackedBar";
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/* this is defined outside of the class so we can use it in connect() */
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function _currentLabelAsString(ownProps) {
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@@ -286,6 +288,94 @@ class CategoryValue extends React.Component {
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this.setState({ editedLabelText: e.target });
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};
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createHistogramBins = (
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world,
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metadataField,
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colorAccessor,
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value,
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width,
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height
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) => {
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/*
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Knowing that colorScale is based off continuous data,
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createHistogramBins fetches the continuous data in relation to the cells relevant to the category value.
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It then separates that data into 50 bins for drawing the mini-histogram
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*/
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const groupBy = world.obsAnnotations.col(metadataField);
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const col =
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world.obsAnnotations.col(colorAccessor) ||
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world.varData.col(colorAccessor);
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const range = col.summarize();
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const histogramMap = col.histogram(
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50,
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[range.min, range.max],
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groupBy
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); /* Because the signature changes we really need different names for histogram to differentiate signatures */
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const bins = histogramMap.has(value)
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? histogramMap.get(value)
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: new Array(50).fill(0);
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const xScale = d3.scaleLinear().domain([0, bins.length]).range([0, width]);
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const largestBin = Math.max(...bins);
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const yScale = d3.scaleLinear().domain([0, largestBin]).range([0, height]);
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return {
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xScale,
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yScale,
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bins,
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};
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};
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createStackedGraphBins = (
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world,
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metadataField,
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colorAccessor,
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categoryValue,
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width
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) => {
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/*
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Knowing that the color scale is based off of categorical data,
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createOccupancyStack obtains a map showing the number if cells per colored value
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Using the colorScale a stack of colored bars is drawn representing the map
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*/
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const { schema } = world;
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const groupBy = world.obsAnnotations.col(metadataField);
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const occupancyMap = world.obsAnnotations
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.col(colorAccessor)
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.histogramCategorical(groupBy);
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const occupancy = occupancyMap.get(categoryValue);
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if (occupancy && occupancy.size > 0) {
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// not all categories have occupancy, so occupancy may be undefined.
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const scale = d3
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.scaleLinear()
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/* get all the keys d[1] as an array, then find the sum */
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.domain([0, d3.sum(Array.from(occupancy.values()))])
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.range([0, width]);
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const categories =
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schema.annotations.obsByName[colorAccessor]?.categories;
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const dfColumn = world.obsAnnotations.col(colorAccessor);
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const categoryValues = dfColumn.summarizeCategorical().categories;
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return {
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domainValues: categoryValues,
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scale,
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domain: categories,
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occupancy,
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};
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}
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return null;
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};
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currentLabelAsString() {
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return _currentLabelAsString(this.props);
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}
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@@ -365,6 +455,7 @@ class CategoryValue extends React.Component {
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const valueToggleLabel = `value-toggle-checkbox-${displayString}`;
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const VALUE_HEIGHT = 11;
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const LEFT_MARGIN = 33;
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const CHECKBOX = 26;
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const CELL_NUMBER = 61;
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@@ -378,11 +469,11 @@ class CategoryValue extends React.Component {
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LABEL_MARGIN +
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(isUserAnno ? ANNO_MENU : 0);
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const OCCUPANCY_WIDTH = 100;
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const CHART_WIDTH = 100;
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const labelWidth =
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colorAccessor && !isColorBy
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? globals.leftSidebarWidth - otherElementsWidth - OCCUPANCY_WIDTH
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? globals.leftSidebarWidth - otherElementsWidth - CHART_WIDTH
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: globals.leftSidebarWidth - otherElementsWidth;
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return (
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@@ -502,14 +593,44 @@ class CategoryValue extends React.Component {
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</div>
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<span style={{ flexShrink: 0 }}>
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{colorAccessor && !isColorBy && !annotations.isEditingLabelName ? (
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<Occupancy
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categoryValue={value}
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colorAccessor={colorAccessor}
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metadataField={metadataField}
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world={world}
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colorScale={colorScale}
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colorByIsCategorical={!!categoricalSelection[colorAccessor]}
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/>
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categoricalSelection[colorAccessor] ? (
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<MiniStackedBar
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/* eslint-disable react/jsx-props-no-spreading -- Disable unneeded on next release of eslint-config-airbnb */
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{...{
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colorScale,
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...this.createStackedGraphBins(
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world,
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metadataField,
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colorAccessor,
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value,
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CHART_WIDTH
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),
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}}
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/* eslint-enable react/jsx-props-no-spreading -- enable */
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height={VALUE_HEIGHT}
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width={CHART_WIDTH}
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/>
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) : (
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<MiniHistogram
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/* eslint-disable react/jsx-props-no-spreading -- Disable unneeded on next release of eslint-config-airbnb */
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{...{
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colorScale,
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...this.createHistogramBins(
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world,
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metadataField,
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colorAccessor,
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value,
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CHART_WIDTH,
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VALUE_HEIGHT
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),
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}}
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/* eslint-enable react/jsx-props-no-spreading -- enable */
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obsOrVarContinuousFieldDisplayName={colorAccessor}
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domainLabel={value}
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height={VALUE_HEIGHT}
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width={CHART_WIDTH}
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/>
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)
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) : null}
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</span>
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</div>
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@@ -536,8 +657,8 @@ class CategoryValue extends React.Component {
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display={isColorBy && categories ? "auto" : "none"}
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style={{
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marginLeft: 5,
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width: 11,
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height: 11,
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width: VALUE_HEIGHT,
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height: VALUE_HEIGHT,
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backgroundColor:
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isColorBy && categories
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? colorScale(categories.indexOf(value))
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97
client/src/components/miniHistogram/index.js
Normal file
97
client/src/components/miniHistogram/index.js
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@@ -0,0 +1,97 @@
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import React from "react";
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import {
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Popover,
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PopoverInteractionKind,
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Position,
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Classes,
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} from "@blueprintjs/core";
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export default class MiniHistogram extends React.PureComponent {
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constructor(props) {
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super(props);
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this.canvasRef = React.createRef();
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}
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drawHistogram = () => {
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const { xScale, yScale, bins, width, height } = this.props;
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const ctx = this.canvasRef.current.getContext("2d");
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ctx.clearRect(0, 0, width, height);
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ctx.fillStyle = "#000";
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let x;
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let y;
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const rectWidth = width / bins.length;
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for (let i = 0, { length } = bins; i < length; i += 1) {
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x = xScale(i);
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y = yScale(bins[i]);
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ctx.fillRect(x, height - y, rectWidth, y);
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}
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};
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componentDidMount = () => {
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this.drawHistogram();
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};
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componentDidUpdate = (prevProps) => {
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const { obsOrVarContinuousFieldDisplayName } = this.props;
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if (
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prevProps.obsOrVarContinuousFieldDisplayName !==
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obsOrVarContinuousFieldDisplayName
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)
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this.drawHistogram();
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};
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render() {
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const {
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domainLabel,
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obsOrVarContinuousFieldDisplayName,
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width,
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height,
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} = this.props;
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return (
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<Popover
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interactionKind={PopoverInteractionKind.HOVER_TARGET_ONLY}
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hoverOpenDelay={1500}
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hoverCloseDelay={200}
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position={Position.LEFT}
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modifiers={{
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preventOverflow: { enabled: false },
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hide: { enabled: false },
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}}
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lazy
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usePortal
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popoverClassName={Classes.POPOVER_CONTENT_SIZING}
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>
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<canvas
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className="bp3-popover-targer"
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style={{
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marginRight: 5,
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width,
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height,
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borderBottom: "solid rgb(230, 230, 230) 0.25px",
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}}
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width={width}
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height={height}
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ref={this.canvasRef}
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/>
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<div key="text" style={{ fontSize: "14px" }}>
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<p style={{ margin: "0" }}>
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This histograms shows the distribution of{" "}
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<strong>{obsOrVarContinuousFieldDisplayName}</strong> within{" "}
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<strong>{domainLabel}</strong>.
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<br />
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<br />
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The x axis is the same for each histogram, while the y axis is
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scaled to the largest bin within this histogram instead of the
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largest bin within the whole category.
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</p>
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</div>
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</Popover>
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);
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}
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}
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70
client/src/components/miniStackedBar/index.js
Normal file
70
client/src/components/miniStackedBar/index.js
Normal file
@@ -0,0 +1,70 @@
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// jshint esversion: 6
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import React from "react";
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export default class MiniStackedBar extends React.PureComponent {
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constructor(props) {
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super(props);
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this.canvasRef = React.createRef();
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}
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drawStacks = () => {
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const {
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domainValues,
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scale,
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domain,
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colorScale,
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occupancy,
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width,
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height,
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} = this.props;
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const ctx = this.canvasRef?.current.getContext("2d");
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ctx.clearRect(0, 0, width, height);
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let currentOffset = 0;
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let occupancyValue;
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let scaledValue;
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let value;
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for (let i = 0, { length } = domainValues; i < length; i += 1) {
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value = domainValues[i];
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occupancyValue = occupancy.get(value);
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scaledValue = scale(occupancyValue);
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ctx.fillStyle = occupancyValue
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? colorScale(domain.indexOf(value))
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: "rgb(255,255,255)";
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ctx.fillRect(currentOffset, 0, occupancyValue ? scaledValue : 0, height);
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currentOffset += occupancyValue ? scaledValue : 0;
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}
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};
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componentDidUpdate = (prevProps) => {
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const { occupancy } = this.props;
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if (occupancy !== prevProps.occupancy) this.drawStacks();
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};
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componentDidMount = () => {
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this.drawStacks();
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};
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render() {
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const { width, height } = this.props;
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const { canvas } = this;
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if (canvas) canvas.getContext("2d").clearRect(0, 0, width, height);
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return (
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<canvas
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className="bp3-popover-targer"
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style={{
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marginRight: 5,
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width,
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height,
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}}
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width={width}
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height={height}
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ref={this.canvasRef}
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/>
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);
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}
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}
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